17 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_087400	DNA mismatch repair protein, C-terminal. (763 aa)
	PEX2_109860	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (270 aa)
	PEX2_109870	Proliferating cell nuclear antigen, PCNA. (611 aa)
	PEX2_040430	DNA mismatch repair protein MutS-like, N-terminal. (950 aa)
	PEX2_094000	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (343 aa)
	PEX2_014170	Rad4 beta-hairpin domain 1. (863 aa)
	PEX2_078510	DNA mismatch repair protein, MSH2; Component of the post-replicative DNA mismatch repair system (MMR). (943 aa)
	PEX2_022420	Rad4 beta-hairpin domain 1. (911 aa)
	PEX2_062550	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1221 aa)
	PEX2_075990	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1130 aa)
	PEX2_010160	DNA mismatch repair protein MutS, core. (924 aa)
	PEX2_037410	Acetamidase/Formamidase. (317 aa)
	PEX2_058440	DNA mismatch repair protein. (898 aa)
	PEX2_058990	DNA repair protein rad10. (326 aa)
	PEX2_003760	DNA mismatch repair protein, C-terminal. (1006 aa)
	PEX2_048180	XPG/RAD2 endonuclease. (737 aa)
	PEX2_067030	DNA mismatch repair protein, C-terminal. (892 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_003760	PEX2_010160	A0A0A2JNL7	A0A0A2J7Y5	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein MutS, core.	0.937
PEX2_003760	PEX2_040430	A0A0A2JNL7	A0A0A2IRT5	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein MutS-like, N-terminal.	0.946
PEX2_003760	PEX2_048180	A0A0A2JNL7	A0A0A2JRU3	DNA mismatch repair protein, C-terminal.	XPG/RAD2 endonuclease.	0.970
PEX2_003760	PEX2_058440	A0A0A2JNL7	A0A0A2JEM3	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein.	0.778
PEX2_003760	PEX2_058990	A0A0A2JNL7	A0A0A2JLW0	DNA mismatch repair protein, C-terminal.	DNA repair protein rad10.	0.511
PEX2_003760	PEX2_062550	A0A0A2JNL7	A0A0A2KSF0	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.992
PEX2_003760	PEX2_067030	A0A0A2JNL7	A0A0A2JU92	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein, C-terminal.	0.816
PEX2_003760	PEX2_075990	A0A0A2JNL7	A0A0A2KVM8	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.942
PEX2_003760	PEX2_078510	A0A0A2JNL7	A0A0A2KBC1	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein, MSH2; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
PEX2_003760	PEX2_087400	A0A0A2JNL7	A0A0A2IK75	DNA mismatch repair protein, C-terminal.	DNA mismatch repair protein, C-terminal.	0.999
PEX2_003760	PEX2_094000	A0A0A2JNL7	A0A0A2IVB9	DNA mismatch repair protein, C-terminal.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.408
PEX2_003760	PEX2_109860	A0A0A2JNL7	A0A0A2ILG0	DNA mismatch repair protein, C-terminal.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.881
PEX2_003760	PEX2_109870	A0A0A2JNL7	A0A0A2IPI5	DNA mismatch repair protein, C-terminal.	Proliferating cell nuclear antigen, PCNA.	0.881
PEX2_010160	PEX2_003760	A0A0A2J7Y5	A0A0A2JNL7	DNA mismatch repair protein MutS, core.	DNA mismatch repair protein, C-terminal.	0.937
PEX2_010160	PEX2_037410	A0A0A2J7Y5	A0A0A2JE21	DNA mismatch repair protein MutS, core.	Acetamidase/Formamidase.	0.889
PEX2_010160	PEX2_048180	A0A0A2J7Y5	A0A0A2JRU3	DNA mismatch repair protein MutS, core.	XPG/RAD2 endonuclease.	0.863
PEX2_010160	PEX2_058440	A0A0A2J7Y5	A0A0A2JEM3	DNA mismatch repair protein MutS, core.	DNA mismatch repair protein.	0.924
PEX2_010160	PEX2_058990	A0A0A2J7Y5	A0A0A2JLW0	DNA mismatch repair protein MutS, core.	DNA repair protein rad10.	0.493
PEX2_010160	PEX2_062550	A0A0A2J7Y5	A0A0A2KSF0	DNA mismatch repair protein MutS, core.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.512
PEX2_010160	PEX2_067030	A0A0A2J7Y5	A0A0A2JU92	DNA mismatch repair protein MutS, core.	DNA mismatch repair protein, C-terminal.	0.946