6 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_045430	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)
	PEX2_076170	PIK-related kinase, FATC; Belongs to the PI3/PI4-kinase family. (2172 aa)
	PEX2_076180	Telomere-length maintenance and DNA damage repair. (400 aa)
	PEX2_097740	Uncharacterized protein. (643 aa)
	PEX2_004560	Non-specific serine/threonine protein kinase. (828 aa)
	PEX2_102540	Non-specific serine/threonine protein kinase. (832 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_004560	PEX2_102540	A0A0A2K994	A0A0A2KA12	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.722
PEX2_045430	PEX2_097740	A0A0A2K7B0	A0A0A2JXJ5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.613
PEX2_076170	PEX2_076180	A0A0A2JMS7	A0A0A2JWY3	PIK-related kinase, FATC; Belongs to the PI3/PI4-kinase family.	Telomere-length maintenance and DNA damage repair.	0.932
PEX2_076180	PEX2_076170	A0A0A2JWY3	A0A0A2JMS7	Telomere-length maintenance and DNA damage repair.	PIK-related kinase, FATC; Belongs to the PI3/PI4-kinase family.	0.932
PEX2_097740	PEX2_045430	A0A0A2JXJ5	A0A0A2K7B0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.613
PEX2_102540	PEX2_004560	A0A0A2KA12	A0A0A2K994	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.722