(41 nodes) Cytosolic large ribosomal subunit network (Penicillium expansum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_106560	Ribosomal protein L34Ae. (136 aa)
	PEX2_010130	Translation protein SH3-like, subgroup. (197 aa)
	PEX2_050160	Uncharacterized protein. (375 aa)
	PEX2_009260	Uncharacterized protein. (179 aa)
	PEX2_071580	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (622 aa)
	PEX2_047550	Ribosomal protein L11, C-terminal; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	PEX2_057060	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (1039 aa)
	PEX2_086410	Ribosomal protein L23/L25, N-terminal. (149 aa)
	PEX2_110210	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	PEX2_109410	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (179 aa)
	PEX2_034640	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family. (175 aa)
	PEX2_035050	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (242 aa)
	PEX2_050760	Translation elongation/initiation factor/Ribosomal, beta-barrel. (109 aa)
	PEX2_050190	Ribosomal protein L21e. (160 aa)
	PEX2_013080	Ribosomal protein L14. (148 aa)
	PEX2_106330	Ribosomal protein L14b/L23e; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	PEX2_011030	Ribosomal protein L26/L24P, eukaryotic/archaeal. (133 aa)
	PEX2_050390	Ribosomal protein L37e. (151 aa)
	PEX2_002290	Ribosomal protein L5. (356 aa)
	PEX2_076530	Ribosomal protein L10e/L16. (224 aa)
	PEX2_000170	Ribosomal protein L4/L1e. (370 aa)
	PEX2_021900	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family. (1266 aa)
	PEX2_002370	Nucleic acid-binding, OB-fold. (254 aa)
	PEX2_024760	Ribosomal protein 60S; Belongs to the eukaryotic ribosomal protein P1/P2 family. (108 aa)
	PEX2_091540	Ribosomal protein L24e-like protein. (158 aa)
	PEX2_098840	Ribosomal protein L30e. (106 aa)
	PEX2_053140	Ribosomal protein L7A/L8. (265 aa)
	PEX2_087910	Uncharacterized protein. (754 aa)
	PEX2_035800	Ribosomal protein L22e. (124 aa)
	PEX2_013460	Ribosomal protein L10e/L16. (221 aa)
	PEX2_042210	Ribosomal protein L37ae. (92 aa)
	PEX2_061750	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal. (300 aa)
	PEX2_027190	Uncharacterized protein. (223 aa)
	PEX2_052640	Ribosomal protein L30, N-terminal. (251 aa)
	PEX2_045270	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (423 aa)
	PEX2_034470	Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family. (79 aa)
	PEX2_100620	Ribosomal protein L29. (124 aa)
	PEX2_062170	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (265 aa)
	PEX2_094800	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (108 aa)
	PEX2_024880	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
	PEX2_074200	Ribosomal protein L28e. (143 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_000170	PEX2_002290	A0A0A2JPH4	A0A0A2JL52	Ribosomal protein L4/L1e.	Ribosomal protein L5.	0.933
PEX2_000170	PEX2_002370	A0A0A2JPH4	A0A0A2JRK9	Ribosomal protein L4/L1e.	Nucleic acid-binding, OB-fold.	0.995
PEX2_000170	PEX2_009260	A0A0A2JPH4	A0A0A2I3G9	Ribosomal protein L4/L1e.	Uncharacterized protein.	0.986
PEX2_000170	PEX2_010130	A0A0A2JPH4	A0A0A2I148	Ribosomal protein L4/L1e.	Translation protein SH3-like, subgroup.	0.994
PEX2_000170	PEX2_011030	A0A0A2JPH4	A0A0A2JG22	Ribosomal protein L4/L1e.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.994
PEX2_000170	PEX2_013080	A0A0A2JPH4	A0A0A2J1H6	Ribosomal protein L4/L1e.	Ribosomal protein L14.	0.995
PEX2_000170	PEX2_013460	A0A0A2JPH4	A0A0A2K557	Ribosomal protein L4/L1e.	Ribosomal protein L10e/L16.	0.965
PEX2_000170	PEX2_021900	A0A0A2JPH4	A0A0A2JQP9	Ribosomal protein L4/L1e.	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	0.995
PEX2_000170	PEX2_024760	A0A0A2JPH4	A0A0A2JUI9	Ribosomal protein L4/L1e.	Ribosomal protein 60S; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.993
PEX2_000170	PEX2_024880	A0A0A2JPH4	A0A0A2KWQ8	Ribosomal protein L4/L1e.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.995
PEX2_000170	PEX2_027190	A0A0A2JPH4	A0A0A2KDR8	Ribosomal protein L4/L1e.	Uncharacterized protein.	0.976
PEX2_000170	PEX2_034470	A0A0A2JPH4	A0A0A2KGS2	Ribosomal protein L4/L1e.	Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.990
PEX2_000170	PEX2_034640	A0A0A2JPH4	A0A0A2IPN4	Ribosomal protein L4/L1e.	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family.	0.994
PEX2_000170	PEX2_035050	A0A0A2JPH4	A0A0A2IQN5	Ribosomal protein L4/L1e.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.994
PEX2_000170	PEX2_035800	A0A0A2JPH4	A0A0A2JZK4	Ribosomal protein L4/L1e.	Ribosomal protein L22e.	0.994
PEX2_000170	PEX2_042210	A0A0A2JPH4	A0A0A2K5S0	Ribosomal protein L4/L1e.	Ribosomal protein L37ae.	0.986
PEX2_000170	PEX2_045270	A0A0A2JPH4	A0A0A2KEH0	Ribosomal protein L4/L1e.	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.787
PEX2_000170	PEX2_047550	A0A0A2JPH4	A0A0A2I9L0	Ribosomal protein L4/L1e.	Ribosomal protein L11, C-terminal; Belongs to the universal ribosomal protein uL11 family.	0.987
PEX2_000170	PEX2_050160	A0A0A2JPH4	A0A0A2I1F4	Ribosomal protein L4/L1e.	Uncharacterized protein.	0.983
PEX2_000170	PEX2_050190	A0A0A2JPH4	A0A0A2J1E3	Ribosomal protein L4/L1e.	Ribosomal protein L21e.	0.993