Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MCM7 | PEX2_006810 | A0A0A2IM98 | A0A0A2JH12 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | DNA helicase; Belongs to the MCM family. | 0.999 |
| MCM7 | PEX2_070530 | A0A0A2IM98 | A0A0A2JIK2 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | DNA helicase; Belongs to the MCM family. | 0.999 |
| MCM7 | PEX2_070930 | A0A0A2IM98 | A0A0A2ID82 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | Histone H2A; Belongs to the histone H2A family. | 0.543 |
| MCM7 | PEX2_081010 | A0A0A2IM98 | A0A0A2K0M2 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] | 0.741 |
| MCM7 | PEX2_102670 | A0A0A2IM98 | A0A0A2K2T5 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | Zinc finger, RING/FYVE/PHD-type. | 0.692 |
| PEX2_002690 | PEX2_050360 | A0A0A2JYP4 | A0A0A2JLK3 | Uncharacterized protein. | RNA-dependent RNA polymerase. | 0.522 |
| PEX2_005640 | PEX2_008160 | A0A0A2IAI8 | A0A0A2J8Q7 | WD_REPEATS_REGION domain-containing protein. | Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. | 0.416 |
| PEX2_005640 | PEX2_037480 | A0A0A2IAI8 | A0A0A2KKA5 | WD_REPEATS_REGION domain-containing protein. | Histone H2A; Belongs to the histone H2A family. | 0.962 |
| PEX2_005640 | PEX2_051690 | A0A0A2IAI8 | A0A0A2IV45 | WD_REPEATS_REGION domain-containing protein. | Concanavalin A-like lectin/glucanases superfamily. | 0.999 |
| PEX2_005640 | PEX2_070930 | A0A0A2IAI8 | A0A0A2ID82 | WD_REPEATS_REGION domain-containing protein. | Histone H2A; Belongs to the histone H2A family. | 0.880 |
| PEX2_005640 | PEX2_075850 | A0A0A2IAI8 | A0A0A2JRV9 | WD_REPEATS_REGION domain-containing protein. | Winged helix-turn-helix transcription repressor DNA-binding; Belongs to the cullin family. | 0.730 |
| PEX2_005640 | PEX2_077480 | A0A0A2IAI8 | A0A0A2IGB6 | WD_REPEATS_REGION domain-containing protein. | Zinc finger, PHD-type. | 0.958 |
| PEX2_005640 | PEX2_078260 | A0A0A2IAI8 | A0A0A2IGG7 | WD_REPEATS_REGION domain-containing protein. | Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. | 0.416 |
| PEX2_005640 | PEX2_082610 | A0A0A2IAI8 | A0A0A2KBK5 | WD_REPEATS_REGION domain-containing protein. | WD_REPEATS_REGION domain-containing protein. | 0.996 |
| PEX2_005640 | PEX2_101310 | A0A0A2IAI8 | A0A0A2I2Y0 | WD_REPEATS_REGION domain-containing protein. | Aminoglycoside phosphotransferase. | 0.937 |
| PEX2_005640 | PEX2_105190 | A0A0A2IAI8 | A0A0A2JC21 | WD_REPEATS_REGION domain-containing protein. | Zinc finger, PHD-type. | 0.448 |
| PEX2_006810 | MCM7 | A0A0A2JH12 | A0A0A2IM98 | DNA helicase; Belongs to the MCM family. | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | 0.999 |
| PEX2_006810 | PEX2_070530 | A0A0A2JH12 | A0A0A2JIK2 | DNA helicase; Belongs to the MCM family. | DNA helicase; Belongs to the MCM family. | 0.999 |
| PEX2_006810 | PEX2_070930 | A0A0A2JH12 | A0A0A2ID82 | DNA helicase; Belongs to the MCM family. | Histone H2A; Belongs to the histone H2A family. | 0.456 |
| PEX2_006810 | PEX2_081010 | A0A0A2JH12 | A0A0A2K0M2 | DNA helicase; Belongs to the MCM family. | FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] | 0.543 |
page 1 of 18