30 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_032290	Reverse transcriptase, RNA-dependent DNA polymerase. (579 aa)
	PEX2_009450	Ribosomal protein S27a. (193 aa)
	PEX2_108620	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (1107 aa)
	PEX2_081370	Uncharacterized protein. (123 aa)
	PEX2_059080	BZIP domain-containing protein. (250 aa)
	PEX2_081360	Reverse transcriptase Ty1/copia-type domain-containing protein. (525 aa)
	PEX2_096950	Uncharacterized protein. (380 aa)
	PEX2_002120	ATPase, AAA-type, core. (890 aa)
	PEX2_030030	ATPase, AAA-type, core. (1162 aa)
	PEX2_065460	Integrase catalytic domain-containing protein. (1069 aa)
	PEX2_101960	ATPase, AAA-type, core. (905 aa)
	PEX2_066190	Uncharacterized protein. (904 aa)
	PEX2_072600	Uncharacterized protein. (215 aa)
	PEX2_014740	Activator of mitotic machinery Cdc14 phosphatase activation C-terminal. (846 aa)
	PEX2_052510	Ubiquitin fusion degradation protein UFD1. (766 aa)
	PEX2_010790	ATPase, AAA-type, core. (966 aa)
	PEX2_091940	Zinc finger, CCCH-type. (822 aa)
	PEX2_007630	ATPase, AAA-type, core. (621 aa)
	PEX2_075810	Nucleic acid-binding, OB-fold. (118 aa)
	PEX2_021970	Uncharacterized protein. (101 aa)
	PEX2_076080	Uncharacterized protein. (401 aa)
	PEX2_052330	ATPase, AAA-type, core. (831 aa)
	PEX2_100960	Uncharacterized protein. (281 aa)
	PEX2_105640	Tetratricopeptide-like helical. (485 aa)
	PEX2_099980	Uncharacterized protein. (146 aa)
	PEX2_071290	Zinc finger, CHY-type. (122 aa)
	PEX2_002550	DNA-repair protein, UmuC-like, N-terminal. (646 aa)
	PEX2_093050	Uncharacterized protein. (147 aa)
	PEX2_049330	Zinc finger, CHY-type. (553 aa)
	PEX2_096330	Uncharacterized protein. (507 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_002120	PEX2_002550	A0A0A2JRJ0	A0A0A2ISN1	ATPase, AAA-type, core.	DNA-repair protein, UmuC-like, N-terminal.	0.662
PEX2_002120	PEX2_009450	A0A0A2JRJ0	A0A0A2J9P5	ATPase, AAA-type, core.	Ribosomal protein S27a.	0.804
PEX2_002120	PEX2_030030	A0A0A2JRJ0	A0A0A2JSM1	ATPase, AAA-type, core.	ATPase, AAA-type, core.	0.591
PEX2_002120	PEX2_052510	A0A0A2JRJ0	A0A0A2K6E0	ATPase, AAA-type, core.	Ubiquitin fusion degradation protein UFD1.	0.845
PEX2_002120	PEX2_059080	A0A0A2JRJ0	A0A0A2JD24	ATPase, AAA-type, core.	BZIP domain-containing protein.	0.804
PEX2_002120	PEX2_108620	A0A0A2JRJ0	A0A0A2JC73	ATPase, AAA-type, core.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.591
PEX2_002550	PEX2_002120	A0A0A2ISN1	A0A0A2JRJ0	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.662
PEX2_002550	PEX2_007630	A0A0A2ISN1	A0A0A2KG54	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.662
PEX2_002550	PEX2_009450	A0A0A2ISN1	A0A0A2J9P5	DNA-repair protein, UmuC-like, N-terminal.	Ribosomal protein S27a.	0.840
PEX2_002550	PEX2_010790	A0A0A2ISN1	A0A0A2K8P8	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.662
PEX2_002550	PEX2_030030	A0A0A2ISN1	A0A0A2JSM1	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.917
PEX2_002550	PEX2_049330	A0A0A2ISN1	A0A0A2IVC5	DNA-repair protein, UmuC-like, N-terminal.	Zinc finger, CHY-type.	0.748
PEX2_002550	PEX2_052330	A0A0A2ISN1	A0A0A2I233	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.662
PEX2_002550	PEX2_052510	A0A0A2ISN1	A0A0A2K6E0	DNA-repair protein, UmuC-like, N-terminal.	Ubiquitin fusion degradation protein UFD1.	0.696
PEX2_002550	PEX2_059080	A0A0A2ISN1	A0A0A2JD24	DNA-repair protein, UmuC-like, N-terminal.	BZIP domain-containing protein.	0.840
PEX2_002550	PEX2_071290	A0A0A2ISN1	A0A0A2INJ1	DNA-repair protein, UmuC-like, N-terminal.	Zinc finger, CHY-type.	0.748
PEX2_002550	PEX2_091940	A0A0A2ISN1	A0A0A2KDZ7	DNA-repair protein, UmuC-like, N-terminal.	Zinc finger, CCCH-type.	0.748
PEX2_002550	PEX2_101960	A0A0A2ISN1	A0A0A2K088	DNA-repair protein, UmuC-like, N-terminal.	ATPase, AAA-type, core.	0.662
PEX2_002550	PEX2_108620	A0A0A2ISN1	A0A0A2JC73	DNA-repair protein, UmuC-like, N-terminal.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.829
PEX2_007630	PEX2_002550	A0A0A2KG54	A0A0A2ISN1	ATPase, AAA-type, core.	DNA-repair protein, UmuC-like, N-terminal.	0.662