44 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_033520	Exosome complex component CSL4. (246 aa)
	PEX2_093560	Exoribonuclease, phosphorolytic domain 1. (384 aa)
	PEX2_073400	Dcp1-like decapping. (319 aa)
	PEX2_103260	Ribonuclease II/R; Belongs to the RNR ribonuclease family. (1031 aa)
	PEX2_047140	Exoribonuclease, phosphorolytic domain 1. (324 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	PEX2_006380	Exoribonuclease, phosphorolytic domain 1. (315 aa)
	PEX2_107720	Topoisomerase II-associated protein PAT1. (824 aa)
	PEX2_083380	Scavenger mRNA decapping enzyme, N-terminal. (334 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
	PEX2_037250	Ctr copper transporter. (488 aa)
	PEX2_043530	Ribonuclease CAF1. (477 aa)
	PEX2_066480	Uncharacterized protein. (506 aa)
	PEX2_034820	Uncharacterized protein. (266 aa)
	PEX2_001600	NOT2_3_5 domain-containing protein. (421 aa)
	PEX2_022220	Uncharacterized protein. (358 aa)
	PEX2_103050	Uncharacterized protein. (388 aa)
	PEX2_051490	Ribonucleoprotein LSM domain, eukaryotic/archaea-type. (71 aa)
	PEX2_028080	CCR4-Not complex component, Not1, C-terminal. (2306 aa)
	PEX2_010230	Ribonuclease II/R. (1376 aa)
	PEX2_049270	WD_REPEATS_REGION domain-containing protein. (309 aa)
	PEX2_047900	Tetratricopeptide-like helical. (1451 aa)
	PEX2_022770	Ribonuclease II/R. (1056 aa)
	PEX2_094660	Helicase, C-terminal. (1307 aa)
	PEX2_012760	U6 snRNA-associated Sm-like protein LSm7. (125 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1170 aa)
	PEX2_019400	Ribosomal protein L27. (392 aa)
	PEX2_068440	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (177 aa)
	PEX2_004450	Translation elongation/initiation factor/Ribosomal, beta-barrel. (800 aa)
	PEX2_086610	mRNA decapping protein 2, Box A. (850 aa)
	PEX2_033850	WW/Rsp5/WWP. (310 aa)
	PEX2_021780	Ribonucleoprotein LSM domain, eukaryotic/archaea-type. (821 aa)
	PEX2_091180	Exoribonuclease, phosphorolytic domain 1. (388 aa)
	PEX2_084960	Not CCR4-Not complex component, N-terminal. (584 aa)
	PEX2_085730	Exoribonuclease, phosphorolytic domain 2. (249 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (681 aa)
	PEX2_073450	PAP/25A-associated. (1091 aa)
	PEX2_041380	GDPGTP exchange factor Sec2p. (275 aa)
	PEX2_042050	Ribonuclease CAF1. (554 aa)
	PEX2_015190	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. (686 aa)
	PEX2_077940	Exosome complex RNA-binding protein 1/RRP40/RRP4. (272 aa)
	PEX2_037570	Helicase, C-terminal; Belongs to the DEAD box helicase family. (525 aa)
	PEX2_092260	RNA recognition motif domain, eukaryote. (1511 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM3	A0A0A2JT10	A0A0A2IES5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.981
LSM1	LSM5	A0A0A2JT10	A0A0A2IKZ1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.979
LSM1	PEX2_012760	A0A0A2JT10	A0A0A2JI16	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm7.	0.978
LSM1	PEX2_015190	A0A0A2JT10	A0A0A2KBV4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.847
LSM1	PEX2_021780	A0A0A2JT10	A0A0A2JZZ3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Ribonucleoprotein LSM domain, eukaryotic/archaea-type.	0.980
LSM1	PEX2_034820	A0A0A2JT10	A0A0A2IVH5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.878
LSM1	PEX2_037570	A0A0A2JT10	A0A0A2KXL3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Helicase, C-terminal; Belongs to the DEAD box helicase family.	0.981
LSM1	PEX2_047900	A0A0A2JT10	A0A0A2JDM3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Tetratricopeptide-like helical.	0.439
LSM1	PEX2_051490	A0A0A2JT10	A0A0A2J3S6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Ribonucleoprotein LSM domain, eukaryotic/archaea-type.	0.978
LSM1	PEX2_066480	A0A0A2JT10	A0A0A2IT87	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.946
LSM1	PEX2_068440	A0A0A2JT10	A0A0A2JSE2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.979
LSM1	PEX2_073400	A0A0A2JT10	A0A0A2I0M8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Dcp1-like decapping.	0.839
LSM1	PEX2_086610	A0A0A2JT10	A0A0A2JYF2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA decapping protein 2, Box A.	0.878
LSM1	PEX2_094660	A0A0A2JT10	A0A0A2JFA8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Helicase, C-terminal.	0.659
LSM1	PEX2_107720	A0A0A2JT10	A0A0A2IF88	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Topoisomerase II-associated protein PAT1.	0.975
LSM3	LSM1	A0A0A2IES5	A0A0A2JT10	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.981
LSM3	LSM5	A0A0A2IES5	A0A0A2IKZ1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	PEX2_012760	A0A0A2IES5	A0A0A2JI16	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.999
LSM3	PEX2_015190	A0A0A2IES5	A0A0A2KBV4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.875
LSM3	PEX2_021780	A0A0A2IES5	A0A0A2JZZ3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucleoprotein LSM domain, eukaryotic/archaea-type.	0.999