13 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_078070	Programmed cell death protein 2, C-terminal. (417 aa)
	PEX2_021600	AGC-kinase, C-terminal; Belongs to the protein kinase superfamily. (391 aa)
	PEX2_011910	Ketopantoate reductase ApbA/PanE, C-terminal. (305 aa)
	PEX2_102670	Zinc finger, RING/FYVE/PHD-type. (100 aa)
	PEX2_032970	Uncharacterized protein. (285 aa)
	PEX2_080510	Uncharacterized protein. (1190 aa)
	PEX2_085670	Zinc finger, MYND-type. (322 aa)
	PEX2_059080	BZIP domain-containing protein. (250 aa)
	PEX2_009450	Ribosomal protein S27a. (193 aa)
	PEX2_028480	cAMP-dependent protein kinase regulatory subunit. (414 aa)
	PEX2_006530	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (346 aa)
	PEX2_057410	Uncharacterized protein. (132 aa)
	PEX2_046630	Uncharacterized protein. (219 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_006530	PEX2_028480	A0A0A2INT5	A0A0A2J6I3	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	cAMP-dependent protein kinase regulatory subunit.	0.954
PEX2_009450	PEX2_102670	A0A0A2J9P5	A0A0A2K2T5	Ribosomal protein S27a.	Zinc finger, RING/FYVE/PHD-type.	0.912
PEX2_011910	PEX2_028480	A0A0A2K6B5	A0A0A2J6I3	Ketopantoate reductase ApbA/PanE, C-terminal.	cAMP-dependent protein kinase regulatory subunit.	0.954
PEX2_021600	PEX2_028480	A0A0A2K7A3	A0A0A2J6I3	AGC-kinase, C-terminal; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase regulatory subunit.	0.992
PEX2_028480	PEX2_006530	A0A0A2J6I3	A0A0A2INT5	cAMP-dependent protein kinase regulatory subunit.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.954
PEX2_028480	PEX2_011910	A0A0A2J6I3	A0A0A2K6B5	cAMP-dependent protein kinase regulatory subunit.	Ketopantoate reductase ApbA/PanE, C-terminal.	0.954
PEX2_028480	PEX2_021600	A0A0A2J6I3	A0A0A2K7A3	cAMP-dependent protein kinase regulatory subunit.	AGC-kinase, C-terminal; Belongs to the protein kinase superfamily.	0.992
PEX2_028480	PEX2_080510	A0A0A2J6I3	A0A0A2JM24	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein.	0.983
PEX2_059080	PEX2_102670	A0A0A2JD24	A0A0A2K2T5	BZIP domain-containing protein.	Zinc finger, RING/FYVE/PHD-type.	0.912
PEX2_080510	PEX2_028480	A0A0A2JM24	A0A0A2J6I3	Uncharacterized protein.	cAMP-dependent protein kinase regulatory subunit.	0.983
PEX2_102670	PEX2_009450	A0A0A2K2T5	A0A0A2J9P5	Zinc finger, RING/FYVE/PHD-type.	Ribosomal protein S27a.	0.912
PEX2_102670	PEX2_059080	A0A0A2K2T5	A0A0A2JD24	Zinc finger, RING/FYVE/PHD-type.	BZIP domain-containing protein.	0.912