28 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_033880	Small GTPase superfamily, Rab type. (201 aa)
	PEX2_067120	Uncharacterized protein. (159 aa)
	PEX2_026090	NLI interacting factor. (750 aa)
	PEX2_037210	Uncharacterized protein. (346 aa)
	PEX2_014120	Nuclear pore complex protein. (1579 aa)
	PEX2_037480	Histone H2A; Belongs to the histone H2A family. (132 aa)
	PEX2_023720	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1175 aa)
	PEX2_003060	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	PEX2_005700	Lipin, N-terminal. (777 aa)
	PEX2_089020	Uncharacterized protein. (641 aa)
	PEX2_029490	Uncharacterized protein. (485 aa)
	PEX2_049420	mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway. (163 aa)
	PEX2_029220	Uncharacterized protein. (260 aa)
	PEX2_010280	Uncharacterized protein. (2247 aa)
	PEX2_006820	Sporulation/nuclear morphology, Spo7. (463 aa)
	PEX2_075520	Dullard phosphatase domain, eukaryotic. (515 aa)
	PEX2_000070	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family. (355 aa)
	PEX2_066900	Serine/threonine-protein kinase. (1146 aa)
	PEX2_037470	Histone H2B; Belongs to the histone H2B family. (141 aa)
	PEX2_001450	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (396 aa)
	PEX2_031350	Structural maintenance of chromosomes protein. (1450 aa)
	PEX2_060950	mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway. (102 aa)
	PEX2_001140	PARP catalytic domain-containing protein. (170 aa)
	PEX2_004000	GRASP55_65 domain-containing protein. (354 aa)
	PEX2_097830	Uncharacterized protein. (203 aa)
	PEX2_068770	CheY-like superfamily. (2042 aa)
	PEX2_070930	Histone H2A; Belongs to the histone H2A family. (139 aa)
	PEX2_012120	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_000070	PEX2_003060	A0A0A2J753	A0A0A2JNE5	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.817
PEX2_000070	PEX2_012120	A0A0A2J753	A0A0A2I954	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.817
PEX2_000070	PEX2_031350	A0A0A2J753	A0A0A2J131	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Structural maintenance of chromosomes protein.	0.656
PEX2_000070	PEX2_037470	A0A0A2J753	A0A0A2J743	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Histone H2B; Belongs to the histone H2B family.	0.815
PEX2_000070	PEX2_037480	A0A0A2J753	A0A0A2KKA5	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Histone H2A; Belongs to the histone H2A family.	0.642
PEX2_000070	PEX2_070930	A0A0A2J753	A0A0A2ID82	Nucleosome assembly protein (NAP); Belongs to the nucleosome assembly protein (NAP) family.	Histone H2A; Belongs to the histone H2A family.	0.896
PEX2_001140	PEX2_001450	A0A0A2IT11	A0A0A2J6K7	PARP catalytic domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.946
PEX2_001140	PEX2_023720	A0A0A2IT11	A0A0A2JW75	PARP catalytic domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.946
PEX2_001140	PEX2_029490	A0A0A2IT11	A0A0A2JJY2	PARP catalytic domain-containing protein.	Uncharacterized protein.	0.868
PEX2_001140	PEX2_037210	A0A0A2IT11	A0A0A2KJU5	PARP catalytic domain-containing protein.	Uncharacterized protein.	0.760
PEX2_001140	PEX2_067120	A0A0A2IT11	A0A0A2K5G6	PARP catalytic domain-containing protein.	Uncharacterized protein.	0.999
PEX2_001140	PEX2_089020	A0A0A2IT11	A0A0A2JKJ2	PARP catalytic domain-containing protein.	Uncharacterized protein.	0.868
PEX2_001140	PEX2_097830	A0A0A2IT11	A0A0A2IQ75	PARP catalytic domain-containing protein.	Uncharacterized protein.	0.760
PEX2_001450	PEX2_001140	A0A0A2J6K7	A0A0A2IT11	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	PARP catalytic domain-containing protein.	0.946
PEX2_001450	PEX2_014120	A0A0A2J6K7	A0A0A2K4C5	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein.	0.946
PEX2_001450	PEX2_023720	A0A0A2J6K7	A0A0A2JW75	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
PEX2_001450	PEX2_029220	A0A0A2J6K7	A0A0A2JIB7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.946
PEX2_001450	PEX2_029490	A0A0A2J6K7	A0A0A2JJY2	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.947
PEX2_001450	PEX2_037210	A0A0A2J6K7	A0A0A2KJU5	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.827
PEX2_001450	PEX2_066900	A0A0A2J6K7	A0A0A2K197	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Serine/threonine-protein kinase.	0.806