12 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_010220	Ubiquitin-conjugating enzyme, E2. (446 aa)
	PEX2_084800	Cyclin, N-terminal; Belongs to the cyclin family. (549 aa)
	PEX2_053780	Uncharacterized protein. (62 aa)
	PEX2_014550	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (326 aa)
	PEX2_059080	BZIP domain-containing protein. (250 aa)
	PEX2_108930	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (315 aa)
	PEX2_009450	Ribosomal protein S27a. (193 aa)
	PEX2_089370	Cyclin, N-terminal; Belongs to the cyclin family. (436 aa)
	PEX2_015500	Cell division control protein; Belongs to the CDC6/cdc18 family. (639 aa)
	PEX2_103350	Cyclin, N-terminal; Belongs to the cyclin family. (459 aa)
	PEX2_081230	Sirtuin family. (715 aa)
	PEX2_053770	Uncharacterized protein. (88 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_009450	PEX2_010220	A0A0A2J9P5	A0A0A2I966	Ribosomal protein S27a.	Ubiquitin-conjugating enzyme, E2.	0.890
PEX2_009450	PEX2_014550	A0A0A2J9P5	A0A0A2JV77	Ribosomal protein S27a.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.747
PEX2_009450	PEX2_015500	A0A0A2J9P5	A0A0A2J5G5	Ribosomal protein S27a.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.739
PEX2_009450	PEX2_053770	A0A0A2J9P5	A0A0A2IY72	Ribosomal protein S27a.	Uncharacterized protein.	0.656
PEX2_009450	PEX2_053780	A0A0A2J9P5	A0A0A2K606	Ribosomal protein S27a.	Uncharacterized protein.	0.656
PEX2_009450	PEX2_081230	A0A0A2J9P5	A0A0A2J1P4	Ribosomal protein S27a.	Sirtuin family.	0.747
PEX2_009450	PEX2_084800	A0A0A2J9P5	A0A0A2KLJ0	Ribosomal protein S27a.	Cyclin, N-terminal; Belongs to the cyclin family.	0.738
PEX2_009450	PEX2_089370	A0A0A2J9P5	A0A0A2J7P7	Ribosomal protein S27a.	Cyclin, N-terminal; Belongs to the cyclin family.	0.729
PEX2_009450	PEX2_103350	A0A0A2J9P5	A0A0A2J2W9	Ribosomal protein S27a.	Cyclin, N-terminal; Belongs to the cyclin family.	0.738
PEX2_009450	PEX2_108930	A0A0A2J9P5	A0A0A2JBS7	Ribosomal protein S27a.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.747
PEX2_010220	PEX2_009450	A0A0A2I966	A0A0A2J9P5	Ubiquitin-conjugating enzyme, E2.	Ribosomal protein S27a.	0.890
PEX2_010220	PEX2_014550	A0A0A2I966	A0A0A2JV77	Ubiquitin-conjugating enzyme, E2.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.757
PEX2_010220	PEX2_015500	A0A0A2I966	A0A0A2J5G5	Ubiquitin-conjugating enzyme, E2.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.741
PEX2_010220	PEX2_053770	A0A0A2I966	A0A0A2IY72	Ubiquitin-conjugating enzyme, E2.	Uncharacterized protein.	0.683
PEX2_010220	PEX2_053780	A0A0A2I966	A0A0A2K606	Ubiquitin-conjugating enzyme, E2.	Uncharacterized protein.	0.683
PEX2_010220	PEX2_059080	A0A0A2I966	A0A0A2JD24	Ubiquitin-conjugating enzyme, E2.	BZIP domain-containing protein.	0.890
PEX2_010220	PEX2_081230	A0A0A2I966	A0A0A2J1P4	Ubiquitin-conjugating enzyme, E2.	Sirtuin family.	0.757
PEX2_010220	PEX2_084800	A0A0A2I966	A0A0A2KLJ0	Ubiquitin-conjugating enzyme, E2.	Cyclin, N-terminal; Belongs to the cyclin family.	0.711
PEX2_010220	PEX2_089370	A0A0A2I966	A0A0A2J7P7	Ubiquitin-conjugating enzyme, E2.	Cyclin, N-terminal; Belongs to the cyclin family.	0.694
PEX2_010220	PEX2_103350	A0A0A2I966	A0A0A2J2W9	Ubiquitin-conjugating enzyme, E2.	Cyclin, N-terminal; Belongs to the cyclin family.	0.711