10 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_034610	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1192 aa)
	PEX2_103460	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (475 aa)
	PEX2_046960	Acetyl-coenzyme A carboxyltransferase, N-terminal. (2276 aa)
	PEX2_040820	Allophanate hydrolase subunit 2. (1246 aa)
	PEX2_097550	Urea carboxylase. (1829 aa)
	PEX2_097960	Biotin carboxylase, C-terminal. (708 aa)
	PEX2_101920	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (484 aa)
	PEX2_043320	Biotin carboxylase, C-terminal. (668 aa)
	PEX2_030060	Dihydrolipoamide succinyltransferase. (557 aa)
	PEX2_037510	Biotin/lipoyl attachment. (455 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_030060	PEX2_034610	A0A0A2IA41	A0A0A2JNU1	Dihydrolipoamide succinyltransferase.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.577
PEX2_030060	PEX2_037510	A0A0A2IA41	A0A0A2I126	Dihydrolipoamide succinyltransferase.	Biotin/lipoyl attachment.	0.922
PEX2_030060	PEX2_040820	A0A0A2IA41	A0A0A2JR86	Dihydrolipoamide succinyltransferase.	Allophanate hydrolase subunit 2.	0.682
PEX2_030060	PEX2_043320	A0A0A2IA41	A0A0A2IDS8	Dihydrolipoamide succinyltransferase.	Biotin carboxylase, C-terminal.	0.577
PEX2_030060	PEX2_046960	A0A0A2IA41	A0A0A2KST1	Dihydrolipoamide succinyltransferase.	Acetyl-coenzyme A carboxyltransferase, N-terminal.	0.621
PEX2_030060	PEX2_097550	A0A0A2IA41	A0A0A2JPY2	Dihydrolipoamide succinyltransferase.	Urea carboxylase.	0.682
PEX2_030060	PEX2_097960	A0A0A2IA41	A0A0A2JMT3	Dihydrolipoamide succinyltransferase.	Biotin carboxylase, C-terminal.	0.619
PEX2_030060	PEX2_101920	A0A0A2IA41	A0A0A2ISK7	Dihydrolipoamide succinyltransferase.	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.964
PEX2_030060	PEX2_103460	A0A0A2IA41	A0A0A2KXS2	Dihydrolipoamide succinyltransferase.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.753
PEX2_034610	PEX2_030060	A0A0A2JNU1	A0A0A2IA41	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Dihydrolipoamide succinyltransferase.	0.577
PEX2_034610	PEX2_037510	A0A0A2JNU1	A0A0A2I126	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Biotin/lipoyl attachment.	0.577
PEX2_034610	PEX2_040820	A0A0A2JNU1	A0A0A2JR86	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Allophanate hydrolase subunit 2.	0.846
PEX2_034610	PEX2_043320	A0A0A2JNU1	A0A0A2IDS8	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Biotin carboxylase, C-terminal.	0.685
PEX2_034610	PEX2_046960	A0A0A2JNU1	A0A0A2KST1	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Acetyl-coenzyme A carboxyltransferase, N-terminal.	0.822
PEX2_034610	PEX2_097550	A0A0A2JNU1	A0A0A2JPY2	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Urea carboxylase.	0.846
PEX2_034610	PEX2_097960	A0A0A2JNU1	A0A0A2JMT3	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Biotin carboxylase, C-terminal.	0.767
PEX2_034610	PEX2_101920	A0A0A2JNU1	A0A0A2ISK7	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.908
PEX2_034610	PEX2_103460	A0A0A2JNU1	A0A0A2KXS2	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.577
PEX2_037510	PEX2_030060	A0A0A2I126	A0A0A2IA41	Biotin/lipoyl attachment.	Dihydrolipoamide succinyltransferase.	0.922
PEX2_037510	PEX2_034610	A0A0A2I126	A0A0A2JNU1	Biotin/lipoyl attachment.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.577