STRINGSTRING
EH55_03610 EH55_03610 EH55_03615 EH55_03615 EH55_03630 EH55_03630 gid gid EH55_03645 EH55_03645 EH55_03650 EH55_03650 EH55_03655 EH55_03655 rnhB rnhB EH55_03670 EH55_03670 EH55_09625 EH55_09625 EH55_13030 EH55_13030 EH55_13160 EH55_13160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EH55_03610Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
EH55_03615General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
EH55_03630Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (306 aa)
gidtRNA (uracil-5-)-methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (451 aa)
EH55_03645Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
EH55_03650Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
EH55_03655Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family. (153 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (194 aa)
EH55_03670Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family. (171 aa)
EH55_09625Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
EH55_13030Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (395 aa)
EH55_13160Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
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