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rpoC rpoC EH55_12790 EH55_12790 rpoA rpoA rnj rnj EH55_11205 EH55_11205 dnaE dnaE EH55_11410 EH55_11410 rpoB rpoB EH55_00355 EH55_00355 EH55_00990 EH55_00990 EH55_02375 EH55_02375 EH55_02395 EH55_02395 dnaG dnaG sigA sigA EH55_03050 EH55_03050 nadE nadE rpmA rpmA EH55_04795 EH55_04795 EH55_05890 EH55_05890 EH55_07475 EH55_07475 EH55_07550 EH55_07550 EH55_09485 EH55_09485
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1688 aa)
EH55_12790Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (356 aa)
rnjRibonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (569 aa)
EH55_11205Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dGTPase family. Type 2 subfamily. (337 aa)
dnaEDNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology. (1142 aa)
EH55_11410Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1223 aa)
EH55_00355Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
EH55_00990Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
EH55_02375Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
EH55_02395Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
dnaGHypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (579 aa)
sigARNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (387 aa)
EH55_03050Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family. (230 aa)
nadENAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (249 aa)
rpmA50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family. (91 aa)
EH55_04795Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
EH55_05890Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
EH55_07475Hypothetical protein; Recycling of diacylglycerol produced during the turnover of membrane phospholipid; Belongs to the bacterial diacylglycerol kinase family. (118 aa)
EH55_07550Flagellar biosynthesis protein FliA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (200 aa)
EH55_09485DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (74 aa)
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
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