(28 nodes) ATP-binding cassette (ABC) transporter complex network (Brochothrix thermosphacta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tcyM	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	artQ	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ODJ59609.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
	msmX	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (367 aa)
	ODJ59690.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	ODJ59930.1	Teichoic acid translocation permease TagG; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	ODJ60002.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	msmX-2	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (368 aa)
	glnM	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	glnP	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	ODJ60364.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	ODJ60406.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	tcyL	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ODJ58783.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (370 aa)
	ODJ58804.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (337 aa)
	ODJ58876.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (556 aa)
	ODJ58878.1	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	ODJ58889.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	opuAC	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	oppA	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	ODJ58919.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (362 aa)
	ODJ58319.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	ODJ58413.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	ODJ58322.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (366 aa)
	ODJ57854.1	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	ODJ57855.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	ODJ57658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)

Your Current Organism:

Brochothrix thermosphacta

NCBI taxonomy Id: 2756
Other names: ATCC 11509, B. thermosphacta, CCUG 35132, CIP 103251, DSM 20171, IFO 12167, JCM 20628, LMG 17208, LMG:17208, Microbacterium thermosphactum, NBRC 12167, NCIB 10018, NCIB:10018, NCTC 10822

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ODJ57854.1	ODJ57855.1	BFR44_10360	BFR44_10365	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ODJ57854.1	ODJ58878.1	BFR44_10360	BFR44_07530	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
ODJ57855.1	ODJ57854.1	BFR44_10365	BFR44_10360	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ODJ57855.1	ODJ58878.1	BFR44_10365	BFR44_07530	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
ODJ57855.1	ODJ59609.1	BFR44_10365	BFR44_00765	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
ODJ57855.1	artQ	BFR44_10365	BFR44_00455	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
ODJ57855.1	tcyL	BFR44_10365	BFR44_06945	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
ODJ58319.1	ODJ58322.1	BFR44_09155	BFR44_09175	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.975
ODJ58319.1	ODJ58413.1	BFR44_09155	BFR44_09160	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ODJ58319.1	msmX	BFR44_09155	BFR44_00940	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.960
ODJ58319.1	msmX-2	BFR44_09155	BFR44_03065	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.960
ODJ58322.1	ODJ58319.1	BFR44_09175	BFR44_09155	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
ODJ58322.1	ODJ58413.1	BFR44_09175	BFR44_09160	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ODJ58322.1	msmX	BFR44_09175	BFR44_00940	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.902
ODJ58322.1	msmX-2	BFR44_09175	BFR44_03065	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.902
ODJ58413.1	ODJ58319.1	BFR44_09160	BFR44_09155	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ODJ58413.1	ODJ58322.1	BFR44_09160	BFR44_09175	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.989
ODJ58413.1	msmX	BFR44_09160	BFR44_00940	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.977
ODJ58413.1	msmX-2	BFR44_09160	BFR44_03065	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.978
ODJ58783.1	ODJ58804.1	BFR44_07010	BFR44_07120	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.428

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