(13 nodes) Mixed, incl. 3-5 exonuclease activity, and tRNA 3-terminal CCA addition network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q2V0_CHOCR	Uncharacterized protein. (826 aa)
	R7Q9S5_CHOCR	Uncharacterized protein. (315 aa)
	R7QBW0_CHOCR	Uncharacterized protein. (415 aa)
	R7QEI2_CHOCR	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (534 aa)
	R7QGJ6_CHOCR	Uncharacterized protein. (246 aa)
	R7QIL0_CHOCR	POLIIIAc domain-containing protein. (1914 aa)
	R7QK87_CHOCR	Exonuclease domain-containing protein. (264 aa)
	R7QL61_CHOCR	S1 motif domain-containing protein. (834 aa)
	R7QMQ5_CHOCR	RNA_pol_sigma70 domain-containing protein. (318 aa)
	R7QNU1_CHOCR	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (529 aa)
	R7QPD4_CHOCR	Toprim domain-containing protein. (955 aa)
	R7QR64_CHOCR	USP domain-containing protein. (1255 aa)
	S0F308_CHOCR	Uncharacterized protein. (1051 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q2V0_CHOCR	R7QEI2_CHOCR	R7Q2V0	R7QEI2	Uncharacterized protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.519
R7Q2V0_CHOCR	R7QK87_CHOCR	R7Q2V0	R7QK87	Uncharacterized protein.	Exonuclease domain-containing protein.	0.559
R7Q2V0_CHOCR	R7QL61_CHOCR	R7Q2V0	R7QL61	Uncharacterized protein.	S1 motif domain-containing protein.	0.916
R7Q2V0_CHOCR	R7QNU1_CHOCR	R7Q2V0	R7QNU1	Uncharacterized protein.	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.519
R7Q2V0_CHOCR	R7QR64_CHOCR	R7Q2V0	R7QR64	Uncharacterized protein.	USP domain-containing protein.	0.559
R7Q9S5_CHOCR	R7QGJ6_CHOCR	R7Q9S5	R7QGJ6	Uncharacterized protein.	Uncharacterized protein.	0.464
R7QBW0_CHOCR	R7QGJ6_CHOCR	R7QBW0	R7QGJ6	Uncharacterized protein.	Uncharacterized protein.	0.464
R7QEI2_CHOCR	R7Q2V0_CHOCR	R7QEI2	R7Q2V0	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Uncharacterized protein.	0.519
R7QEI2_CHOCR	R7QL61_CHOCR	R7QEI2	R7QL61	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	S1 motif domain-containing protein.	0.519
R7QGJ6_CHOCR	R7Q9S5_CHOCR	R7QGJ6	R7Q9S5	Uncharacterized protein.	Uncharacterized protein.	0.464
R7QGJ6_CHOCR	R7QBW0_CHOCR	R7QGJ6	R7QBW0	Uncharacterized protein.	Uncharacterized protein.	0.464
R7QGJ6_CHOCR	R7QIL0_CHOCR	R7QGJ6	R7QIL0	Uncharacterized protein.	POLIIIAc domain-containing protein.	0.891
R7QGJ6_CHOCR	R7QPD4_CHOCR	R7QGJ6	R7QPD4	Uncharacterized protein.	Toprim domain-containing protein.	0.481
R7QIL0_CHOCR	R7QGJ6_CHOCR	R7QIL0	R7QGJ6	POLIIIAc domain-containing protein.	Uncharacterized protein.	0.891
R7QIL0_CHOCR	R7QK87_CHOCR	R7QIL0	R7QK87	POLIIIAc domain-containing protein.	Exonuclease domain-containing protein.	0.903
R7QIL0_CHOCR	R7QMQ5_CHOCR	R7QIL0	R7QMQ5	POLIIIAc domain-containing protein.	RNA_pol_sigma70 domain-containing protein.	0.553
R7QIL0_CHOCR	R7QPD4_CHOCR	R7QIL0	R7QPD4	POLIIIAc domain-containing protein.	Toprim domain-containing protein.	0.604
R7QIL0_CHOCR	R7QR64_CHOCR	R7QIL0	R7QR64	POLIIIAc domain-containing protein.	USP domain-containing protein.	0.903
R7QIL0_CHOCR	S0F308_CHOCR	R7QIL0	S0F308	POLIIIAc domain-containing protein.	Uncharacterized protein.	0.452
R7QK87_CHOCR	R7Q2V0_CHOCR	R7QK87	R7Q2V0	Exonuclease domain-containing protein.	Uncharacterized protein.	0.559