(43 nodes) Small nuclear ribonucleoprotein complex, and snRNA binding network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q235_CHOCR	RRM domain-containing protein. (240 aa)
	R7Q2G9_CHOCR	Putative splicing factor 3b, subunit 1, SF3b1. (1254 aa)
	R7Q4L4_CHOCR	Uncharacterized protein. (369 aa)
	R7Q5E3_CHOCR	Matrin-type domain-containing protein. (475 aa)
	R7Q5P1_CHOCR	U4/U6 small nuclear ribonucleoprotein Prp3, putative. (588 aa)
	R7Q621_CHOCR	Uncharacterized protein. (69 aa)
	R7Q666_CHOCR	Uncharacterized protein. (69 aa)
	R7Q6I1_CHOCR	Uncharacterized protein. (68 aa)
	R7Q6T1_CHOCR	Putative splicing factor 3B, subunit 3, SF3B3. (1289 aa)
	R7Q753_CHOCR	Similar to putative C-type U1 snRNP. (139 aa)
	R7Q7E9_CHOCR	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (190 aa)
	R7Q9A7_CHOCR	Similar to PRP6 pre-mRNA splicing factor 6 homolog. (944 aa)
	R7Q9S4_CHOCR	Uncharacterized protein. (88 aa)
	R7QAW1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QBP1_CHOCR	Spliceosome associated protein, putative. (484 aa)
	R7QBS8_CHOCR	Thioredoxin-like protein 4A. (142 aa)
	R7QC89_CHOCR	Splicing factor SF1, predicted. (454 aa)
	R7QCR0_CHOCR	Probable U2 small nuclear ribonucleoprotein B. (107 aa)
	R7QDC6_CHOCR	WD_REPEATS_REGION domain-containing protein. (332 aa)
	R7QDE4_CHOCR	Sm protein, snRNP core protein, SmB. (195 aa)
	R7QDR6_CHOCR	Snrnp assembly factor and ubiquitin specific protease 39. (474 aa)
	R7QE84_CHOCR	Pre-mRNA processing 8 protein, PRP8. (2422 aa)
	R7QF41_CHOCR	U4/U6 small nuclear ribonucleoprotein Prp31, putative. (496 aa)
	R7QF74_CHOCR	DEAD box RNA helicase, putative; Belongs to the DEAD box helicase family. (642 aa)
	R7QFS3_CHOCR	Matrin-type domain-containing protein. (258 aa)
	R7QGI3_CHOCR	Splicing factor 3A subunit 1, SF3-A. (676 aa)
	R7QGY8_CHOCR	PSP domain-containing protein. (548 aa)
	R7QHD4_CHOCR	Probable ATP-dependent RNA helicase DDX46-like. (1011 aa)
	R7QKP6_CHOCR	Sm protein, snRNP core protein, SmF. (93 aa)
	R7QLE2_CHOCR	Small nuclear ribonucleoprotein G. (76 aa)
	R7QM15_CHOCR	Pre-mRNA-splicing helicase BRR2. (2293 aa)
	R7QMZ5_CHOCR	Uncharacterized protein. (264 aa)
	R7QN78_CHOCR	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (123 aa)
	R7QNC1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QPJ5_CHOCR	Putative Pre-mRNA branch site p14-like protein. (92 aa)
	R7QPZ7_CHOCR	Uncharacterized protein. (438 aa)
	R7QQB1_CHOCR	Elongation factor Tu GTP-binding domain-containing protein 2. (1025 aa)
	R7QQD6_CHOCR	Small nuclear ribonucleoprotein Sm D2. (129 aa)
	R7QQK6_CHOCR	Uncharacterized protein. (712 aa)
	R7QQT6_CHOCR	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	R7QQX0_CHOCR	Putative splicing factor 3B subunit 5. (104 aa)
	R7QU35_CHOCR	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	R7QUE7_CHOCR	Uncharacterized protein; Belongs to the DEAD box helicase family. (630 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q235_CHOCR	R7Q2G9_CHOCR	R7Q235	R7Q2G9	RRM domain-containing protein.	Putative splicing factor 3b, subunit 1, SF3b1.	0.592
R7Q235_CHOCR	R7Q4L4_CHOCR	R7Q235	R7Q4L4	RRM domain-containing protein.	Uncharacterized protein.	0.986
R7Q235_CHOCR	R7Q5E3_CHOCR	R7Q235	R7Q5E3	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.881
R7Q235_CHOCR	R7Q5P1_CHOCR	R7Q235	R7Q5P1	RRM domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp3, putative.	0.654
R7Q235_CHOCR	R7Q621_CHOCR	R7Q235	R7Q621	RRM domain-containing protein.	Uncharacterized protein.	0.592
R7Q235_CHOCR	R7Q666_CHOCR	R7Q235	R7Q666	RRM domain-containing protein.	Uncharacterized protein.	0.592
R7Q235_CHOCR	R7Q6I1_CHOCR	R7Q235	R7Q6I1	RRM domain-containing protein.	Uncharacterized protein.	0.592
R7Q235_CHOCR	R7Q6T1_CHOCR	R7Q235	R7Q6T1	RRM domain-containing protein.	Putative splicing factor 3B, subunit 3, SF3B3.	0.904
R7Q235_CHOCR	R7Q753_CHOCR	R7Q235	R7Q753	RRM domain-containing protein.	Similar to putative C-type U1 snRNP.	0.991
R7Q235_CHOCR	R7Q9A7_CHOCR	R7Q235	R7Q9A7	RRM domain-containing protein.	Similar to PRP6 pre-mRNA splicing factor 6 homolog.	0.634
R7Q235_CHOCR	R7Q9S4_CHOCR	R7Q235	R7Q9S4	RRM domain-containing protein.	Uncharacterized protein.	0.883
R7Q235_CHOCR	R7QAW1_CHOCR	R7Q235	R7QAW1	RRM domain-containing protein.	Probable U2 small nuclear ribonucleoprotein A.	0.887
R7Q235_CHOCR	R7QBP1_CHOCR	R7Q235	R7QBP1	RRM domain-containing protein.	Spliceosome associated protein, putative.	0.925
R7Q235_CHOCR	R7QC89_CHOCR	R7Q235	R7QC89	RRM domain-containing protein.	Splicing factor SF1, predicted.	0.576
R7Q235_CHOCR	R7QCR0_CHOCR	R7Q235	R7QCR0	RRM domain-containing protein.	Probable U2 small nuclear ribonucleoprotein B.	0.973
R7Q235_CHOCR	R7QDC6_CHOCR	R7Q235	R7QDC6	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.554
R7Q235_CHOCR	R7QDE4_CHOCR	R7Q235	R7QDE4	RRM domain-containing protein.	Sm protein, snRNP core protein, SmB.	0.988
R7Q235_CHOCR	R7QDR6_CHOCR	R7Q235	R7QDR6	RRM domain-containing protein.	Snrnp assembly factor and ubiquitin specific protease 39.	0.457
R7Q235_CHOCR	R7QE84_CHOCR	R7Q235	R7QE84	RRM domain-containing protein.	Pre-mRNA processing 8 protein, PRP8.	0.862
R7Q235_CHOCR	R7QF41_CHOCR	R7Q235	R7QF41	RRM domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp31, putative.	0.499