(27 nodes) U2 snRNP, and snRNA binding network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q235_CHOCR	RRM domain-containing protein. (240 aa)
	R7Q2G9_CHOCR	Putative splicing factor 3b, subunit 1, SF3b1. (1254 aa)
	R7Q4L4_CHOCR	Uncharacterized protein. (369 aa)
	R7Q5E3_CHOCR	Matrin-type domain-containing protein. (475 aa)
	R7Q6T1_CHOCR	Putative splicing factor 3B, subunit 3, SF3B3. (1289 aa)
	R7Q753_CHOCR	Similar to putative C-type U1 snRNP. (139 aa)
	R7Q9S4_CHOCR	Uncharacterized protein. (88 aa)
	R7QAW1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QBP1_CHOCR	Spliceosome associated protein, putative. (484 aa)
	R7QC89_CHOCR	Splicing factor SF1, predicted. (454 aa)
	R7QCR0_CHOCR	Probable U2 small nuclear ribonucleoprotein B. (107 aa)
	R7QDE4_CHOCR	Sm protein, snRNP core protein, SmB. (195 aa)
	R7QFS3_CHOCR	Matrin-type domain-containing protein. (258 aa)
	R7QGI3_CHOCR	Splicing factor 3A subunit 1, SF3-A. (676 aa)
	R7QGY8_CHOCR	PSP domain-containing protein. (548 aa)
	R7QHD4_CHOCR	Probable ATP-dependent RNA helicase DDX46-like. (1011 aa)
	R7QKP6_CHOCR	Sm protein, snRNP core protein, SmF. (93 aa)
	R7QLE2_CHOCR	Small nuclear ribonucleoprotein G. (76 aa)
	R7QMZ5_CHOCR	Uncharacterized protein. (264 aa)
	R7QN78_CHOCR	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (123 aa)
	R7QNC1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QPJ5_CHOCR	Putative Pre-mRNA branch site p14-like protein. (92 aa)
	R7QQD6_CHOCR	Small nuclear ribonucleoprotein Sm D2. (129 aa)
	R7QQT6_CHOCR	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	R7QQX0_CHOCR	Putative splicing factor 3B subunit 5. (104 aa)
	R7QU35_CHOCR	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	R7QUE7_CHOCR	Uncharacterized protein; Belongs to the DEAD box helicase family. (630 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q235_CHOCR	R7Q2G9_CHOCR	R7Q235	R7Q2G9	RRM domain-containing protein.	Putative splicing factor 3b, subunit 1, SF3b1.	0.592
R7Q235_CHOCR	R7Q4L4_CHOCR	R7Q235	R7Q4L4	RRM domain-containing protein.	Uncharacterized protein.	0.986
R7Q235_CHOCR	R7Q5E3_CHOCR	R7Q235	R7Q5E3	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.881
R7Q235_CHOCR	R7Q6T1_CHOCR	R7Q235	R7Q6T1	RRM domain-containing protein.	Putative splicing factor 3B, subunit 3, SF3B3.	0.904
R7Q235_CHOCR	R7Q753_CHOCR	R7Q235	R7Q753	RRM domain-containing protein.	Similar to putative C-type U1 snRNP.	0.991
R7Q235_CHOCR	R7Q9S4_CHOCR	R7Q235	R7Q9S4	RRM domain-containing protein.	Uncharacterized protein.	0.883
R7Q235_CHOCR	R7QAW1_CHOCR	R7Q235	R7QAW1	RRM domain-containing protein.	Probable U2 small nuclear ribonucleoprotein A.	0.887
R7Q235_CHOCR	R7QBP1_CHOCR	R7Q235	R7QBP1	RRM domain-containing protein.	Spliceosome associated protein, putative.	0.925
R7Q235_CHOCR	R7QC89_CHOCR	R7Q235	R7QC89	RRM domain-containing protein.	Splicing factor SF1, predicted.	0.576
R7Q235_CHOCR	R7QCR0_CHOCR	R7Q235	R7QCR0	RRM domain-containing protein.	Probable U2 small nuclear ribonucleoprotein B.	0.973
R7Q235_CHOCR	R7QDE4_CHOCR	R7Q235	R7QDE4	RRM domain-containing protein.	Sm protein, snRNP core protein, SmB.	0.988
R7Q235_CHOCR	R7QFS3_CHOCR	R7Q235	R7QFS3	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.906
R7Q235_CHOCR	R7QGI3_CHOCR	R7Q235	R7QGI3	RRM domain-containing protein.	Splicing factor 3A subunit 1, SF3-A.	0.499
R7Q235_CHOCR	R7QGY8_CHOCR	R7Q235	R7QGY8	RRM domain-containing protein.	PSP domain-containing protein.	0.946
R7Q235_CHOCR	R7QHD4_CHOCR	R7Q235	R7QHD4	RRM domain-containing protein.	Probable ATP-dependent RNA helicase DDX46-like.	0.653
R7Q235_CHOCR	R7QKP6_CHOCR	R7Q235	R7QKP6	RRM domain-containing protein.	Sm protein, snRNP core protein, SmF.	0.993
R7Q235_CHOCR	R7QLE2_CHOCR	R7Q235	R7QLE2	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.995
R7Q235_CHOCR	R7QMZ5_CHOCR	R7Q235	R7QMZ5	RRM domain-containing protein.	Uncharacterized protein.	0.725
R7Q235_CHOCR	R7QN78_CHOCR	R7Q235	R7QN78	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.994
R7Q235_CHOCR	R7QNC1_CHOCR	R7Q235	R7QNC1	RRM domain-containing protein.	Probable U2 small nuclear ribonucleoprotein A.	0.887