(17 nodes) Prp19 complex, and Catalytic step 2 spliceosome network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q3Z3_CHOCR	Pre-mRNA-splicing factor SYF1, putative. (971 aa)
	R7Q5G9_CHOCR	Similar to intron-binding protein aquarius. (1408 aa)
	R7Q616_CHOCR	MI domain-containing protein. (769 aa)
	R7Q7N3_CHOCR	Coiled-coil domain-containing protein, putative. (285 aa)
	R7Q9H2_CHOCR	Putative Pre-mRNA-processing factor 19. (531 aa)
	R7QBA7_CHOCR	DUF1716 domain-containing protein. (548 aa)
	R7QCN3_CHOCR	Uncharacterized protein. (279 aa)
	R7QDM5_CHOCR	Uncharacterized protein. (208 aa)
	R7QG63_CHOCR	Uncharacterized protein. (676 aa)
	R7QHF4_CHOCR	Uncharacterized protein. (440 aa)
	R7QJ34_CHOCR	WD_REPEATS_REGION domain-containing protein. (521 aa)
	R7QJF5_CHOCR	Similarity to pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (735 aa)
	R7QLB2_CHOCR	Pre-mRNA-splicing factor Syf2, putative. (203 aa)
	R7QLL7_CHOCR	Uncharacterized protein. (627 aa)
	R7QNC0_CHOCR	WD_REPEATS_REGION domain-containing protein. (497 aa)
	R7QVS9_CHOCR	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (191 aa)
	S0F2U2_CHOCR	SKIP/SNW domain containing protein. (435 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q3Z3_CHOCR	R7Q5G9_CHOCR	R7Q3Z3	R7Q5G9	Pre-mRNA-splicing factor SYF1, putative.	Similar to intron-binding protein aquarius.	0.996
R7Q3Z3_CHOCR	R7Q616_CHOCR	R7Q3Z3	R7Q616	Pre-mRNA-splicing factor SYF1, putative.	MI domain-containing protein.	0.978
R7Q3Z3_CHOCR	R7Q7N3_CHOCR	R7Q3Z3	R7Q7N3	Pre-mRNA-splicing factor SYF1, putative.	Coiled-coil domain-containing protein, putative.	0.984
R7Q3Z3_CHOCR	R7Q9H2_CHOCR	R7Q3Z3	R7Q9H2	Pre-mRNA-splicing factor SYF1, putative.	Putative Pre-mRNA-processing factor 19.	0.997
R7Q3Z3_CHOCR	R7QBA7_CHOCR	R7Q3Z3	R7QBA7	Pre-mRNA-splicing factor SYF1, putative.	DUF1716 domain-containing protein.	0.817
R7Q3Z3_CHOCR	R7QCN3_CHOCR	R7Q3Z3	R7QCN3	Pre-mRNA-splicing factor SYF1, putative.	Uncharacterized protein.	0.969
R7Q3Z3_CHOCR	R7QDM5_CHOCR	R7Q3Z3	R7QDM5	Pre-mRNA-splicing factor SYF1, putative.	Uncharacterized protein.	0.996
R7Q3Z3_CHOCR	R7QG63_CHOCR	R7Q3Z3	R7QG63	Pre-mRNA-splicing factor SYF1, putative.	Uncharacterized protein.	0.999
R7Q3Z3_CHOCR	R7QHF4_CHOCR	R7Q3Z3	R7QHF4	Pre-mRNA-splicing factor SYF1, putative.	Uncharacterized protein.	0.996
R7Q3Z3_CHOCR	R7QJ34_CHOCR	R7Q3Z3	R7QJ34	Pre-mRNA-splicing factor SYF1, putative.	WD_REPEATS_REGION domain-containing protein.	0.985
R7Q3Z3_CHOCR	R7QJF5_CHOCR	R7Q3Z3	R7QJF5	Pre-mRNA-splicing factor SYF1, putative.	Similarity to pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.904
R7Q3Z3_CHOCR	R7QLB2_CHOCR	R7Q3Z3	R7QLB2	Pre-mRNA-splicing factor SYF1, putative.	Pre-mRNA-splicing factor Syf2, putative.	0.998
R7Q3Z3_CHOCR	R7QLL7_CHOCR	R7Q3Z3	R7QLL7	Pre-mRNA-splicing factor SYF1, putative.	Uncharacterized protein.	0.989
R7Q3Z3_CHOCR	R7QNC0_CHOCR	R7Q3Z3	R7QNC0	Pre-mRNA-splicing factor SYF1, putative.	WD_REPEATS_REGION domain-containing protein.	0.984
R7Q3Z3_CHOCR	R7QVS9_CHOCR	R7Q3Z3	R7QVS9	Pre-mRNA-splicing factor SYF1, putative.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.919
R7Q3Z3_CHOCR	S0F2U2_CHOCR	R7Q3Z3	S0F2U2	Pre-mRNA-splicing factor SYF1, putative.	SKIP/SNW domain containing protein.	0.997
R7Q5G9_CHOCR	R7Q3Z3_CHOCR	R7Q5G9	R7Q3Z3	Similar to intron-binding protein aquarius.	Pre-mRNA-splicing factor SYF1, putative.	0.996
R7Q5G9_CHOCR	R7Q616_CHOCR	R7Q5G9	R7Q616	Similar to intron-binding protein aquarius.	MI domain-containing protein.	0.838
R7Q5G9_CHOCR	R7Q7N3_CHOCR	R7Q5G9	R7Q7N3	Similar to intron-binding protein aquarius.	Coiled-coil domain-containing protein, putative.	0.837
R7Q5G9_CHOCR	R7Q9H2_CHOCR	R7Q5G9	R7Q9H2	Similar to intron-binding protein aquarius.	Putative Pre-mRNA-processing factor 19.	0.996