(5 nodes) Lsm1-7-Pat1 complex network (Chondrus crispus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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textmining

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protein homology

Your Input:
	R7Q284_CHOCR	Sm-like protein, LSm3. (92 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (213 aa)
	R7QGU5_CHOCR	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	R7QMK3_CHOCR	Sm-like protein, LSm6. (97 aa)
	R7QQI6_CHOCR	Sm-like protein, LSm7. (234 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	R7Q284_CHOCR	R7QB24	R7Q284	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm3.	0.997
LSM1	R7QGU5_CHOCR	R7QB24	R7QGU5	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
LSM1	R7QMK3_CHOCR	R7QB24	R7QMK3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm6.	0.997
LSM1	R7QQI6_CHOCR	R7QB24	R7QQI6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm7.	0.997
R7Q284_CHOCR	LSM1	R7Q284	R7QB24	Sm-like protein, LSm3.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.997
R7Q284_CHOCR	R7QGU5_CHOCR	R7Q284	R7QGU5	Sm-like protein, LSm3.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
R7Q284_CHOCR	R7QMK3_CHOCR	R7Q284	R7QMK3	Sm-like protein, LSm3.	Sm-like protein, LSm6.	0.999
R7Q284_CHOCR	R7QQI6_CHOCR	R7Q284	R7QQI6	Sm-like protein, LSm3.	Sm-like protein, LSm7.	0.999
R7QGU5_CHOCR	LSM1	R7QGU5	R7QB24	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.997
R7QGU5_CHOCR	R7Q284_CHOCR	R7QGU5	R7Q284	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm3.	0.999
R7QGU5_CHOCR	R7QMK3_CHOCR	R7QGU5	R7QMK3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm6.	0.999
R7QGU5_CHOCR	R7QQI6_CHOCR	R7QGU5	R7QQI6	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm7.	0.999
R7QMK3_CHOCR	LSM1	R7QMK3	R7QB24	Sm-like protein, LSm6.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.997
R7QMK3_CHOCR	R7Q284_CHOCR	R7QMK3	R7Q284	Sm-like protein, LSm6.	Sm-like protein, LSm3.	0.999
R7QMK3_CHOCR	R7QGU5_CHOCR	R7QMK3	R7QGU5	Sm-like protein, LSm6.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
R7QMK3_CHOCR	R7QQI6_CHOCR	R7QMK3	R7QQI6	Sm-like protein, LSm6.	Sm-like protein, LSm7.	0.999
R7QQI6_CHOCR	LSM1	R7QQI6	R7QB24	Sm-like protein, LSm7.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.997
R7QQI6_CHOCR	R7Q284_CHOCR	R7QQI6	R7Q284	Sm-like protein, LSm7.	Sm-like protein, LSm3.	0.999
R7QQI6_CHOCR	R7QGU5_CHOCR	R7QQI6	R7QGU5	Sm-like protein, LSm7.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
R7QQI6_CHOCR	R7QMK3_CHOCR	R7QQI6	R7QMK3	Sm-like protein, LSm7.	Sm-like protein, LSm6.	0.999