(14 nodes) SUMOylation of SUMOylation proteins, and Nucleoporin FG repeat network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q618_CHOCR	Nuclear pore protein. (536 aa)
	R7Q818_CHOCR	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (469 aa)
	R7Q8J9_CHOCR	Nsp1_C domain-containing protein. (705 aa)
	R7Q9V9_CHOCR	Nuclear pore protein. (504 aa)
	R7QA75_CHOCR	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (914 aa)
	R7QAH0_CHOCR	Peptidase S59 domain-containing protein. (783 aa)
	R7QAP6_CHOCR	WD40 repeat-containing protein. (353 aa)
	R7QFR8_CHOCR	Peptidase S59 domain-containing protein. (791 aa)
	R7QG45_CHOCR	Uncharacterized protein. (1208 aa)
	R7QGW8_CHOCR	WD_REPEATS_REGION domain-containing protein. (399 aa)
	R7QHN8_CHOCR	WD40 repeat-containing protein. (363 aa)
	R7QKX8_CHOCR	Uncharacterized protein. (425 aa)
	R7QKY7_CHOCR	Uncharacterized protein. (575 aa)
	R7QP53_CHOCR	Nup54 domain-containing protein. (272 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q618_CHOCR	R7Q818_CHOCR	R7Q618	R7Q818	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.879
R7Q618_CHOCR	R7Q8J9_CHOCR	R7Q618	R7Q8J9	Nuclear pore protein.	Nsp1_C domain-containing protein.	0.962
R7Q618_CHOCR	R7Q9V9_CHOCR	R7Q618	R7Q9V9	Nuclear pore protein.	Nuclear pore protein.	0.900
R7Q618_CHOCR	R7QA75_CHOCR	R7Q618	R7QA75	Nuclear pore protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.968
R7Q618_CHOCR	R7QAH0_CHOCR	R7Q618	R7QAH0	Nuclear pore protein.	Peptidase S59 domain-containing protein.	0.665
R7Q618_CHOCR	R7QAP6_CHOCR	R7Q618	R7QAP6	Nuclear pore protein.	WD40 repeat-containing protein.	0.701
R7Q618_CHOCR	R7QFR8_CHOCR	R7Q618	R7QFR8	Nuclear pore protein.	Peptidase S59 domain-containing protein.	0.665
R7Q618_CHOCR	R7QG45_CHOCR	R7Q618	R7QG45	Nuclear pore protein.	Uncharacterized protein.	0.969
R7Q618_CHOCR	R7QGW8_CHOCR	R7Q618	R7QGW8	Nuclear pore protein.	WD_REPEATS_REGION domain-containing protein.	0.870
R7Q618_CHOCR	R7QHN8_CHOCR	R7Q618	R7QHN8	Nuclear pore protein.	WD40 repeat-containing protein.	0.701
R7Q618_CHOCR	R7QKX8_CHOCR	R7Q618	R7QKX8	Nuclear pore protein.	Uncharacterized protein.	0.909
R7Q618_CHOCR	R7QKY7_CHOCR	R7Q618	R7QKY7	Nuclear pore protein.	Uncharacterized protein.	0.665
R7Q618_CHOCR	R7QP53_CHOCR	R7Q618	R7QP53	Nuclear pore protein.	Nup54 domain-containing protein.	0.961
R7Q818_CHOCR	R7Q618_CHOCR	R7Q818	R7Q618	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.879
R7Q818_CHOCR	R7Q8J9_CHOCR	R7Q818	R7Q8J9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nsp1_C domain-containing protein.	0.956
R7Q818_CHOCR	R7Q9V9_CHOCR	R7Q818	R7Q9V9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.879
R7Q818_CHOCR	R7QA75_CHOCR	R7Q818	R7QA75	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.980
R7Q818_CHOCR	R7QAH0_CHOCR	R7Q818	R7QAH0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Peptidase S59 domain-containing protein.	0.637
R7Q818_CHOCR	R7QAP6_CHOCR	R7Q818	R7QAP6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD40 repeat-containing protein.	0.779
R7Q818_CHOCR	R7QFR8_CHOCR	R7Q818	R7QFR8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Peptidase S59 domain-containing protein.	0.637