(5 nodes) Circadian rhythm - plant, and Enzyme-substrate adaptor activity network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q8L1_CHOCR	E3 ubiquitin-protein ligase. (704 aa)
	R7Q9J2_CHOCR	Deoxyribodipyrimidine photolyase. (1294 aa)
	R7QAJ5_CHOCR	Uncharacterized protein. (734 aa)
	R7QBI4_CHOCR	Uncharacterized protein. (538 aa)
	R7QIS0_CHOCR	WD_REPEATS_REGION domain-containing protein. (428 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q8L1_CHOCR	R7Q9J2_CHOCR	R7Q8L1	R7Q9J2	E3 ubiquitin-protein ligase.	Deoxyribodipyrimidine photolyase.	0.915
R7Q8L1_CHOCR	R7QAJ5_CHOCR	R7Q8L1	R7QAJ5	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.954
R7Q8L1_CHOCR	R7QBI4_CHOCR	R7Q8L1	R7QBI4	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.900
R7Q8L1_CHOCR	R7QIS0_CHOCR	R7Q8L1	R7QIS0	E3 ubiquitin-protein ligase.	WD_REPEATS_REGION domain-containing protein.	0.907
R7Q9J2_CHOCR	R7Q8L1_CHOCR	R7Q9J2	R7Q8L1	Deoxyribodipyrimidine photolyase.	E3 ubiquitin-protein ligase.	0.915
R7Q9J2_CHOCR	R7QIS0_CHOCR	R7Q9J2	R7QIS0	Deoxyribodipyrimidine photolyase.	WD_REPEATS_REGION domain-containing protein.	0.915
R7QAJ5_CHOCR	R7Q8L1_CHOCR	R7QAJ5	R7Q8L1	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.954
R7QAJ5_CHOCR	R7QBI4_CHOCR	R7QAJ5	R7QBI4	Uncharacterized protein.	Uncharacterized protein.	0.940
R7QAJ5_CHOCR	R7QIS0_CHOCR	R7QAJ5	R7QIS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.950
R7QBI4_CHOCR	R7Q8L1_CHOCR	R7QBI4	R7Q8L1	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.900
R7QBI4_CHOCR	R7QAJ5_CHOCR	R7QBI4	R7QAJ5	Uncharacterized protein.	Uncharacterized protein.	0.940
R7QBI4_CHOCR	R7QIS0_CHOCR	R7QBI4	R7QIS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.900
R7QIS0_CHOCR	R7Q8L1_CHOCR	R7QIS0	R7Q8L1	WD_REPEATS_REGION domain-containing protein.	E3 ubiquitin-protein ligase.	0.907
R7QIS0_CHOCR	R7Q9J2_CHOCR	R7QIS0	R7Q9J2	WD_REPEATS_REGION domain-containing protein.	Deoxyribodipyrimidine photolyase.	0.915
R7QIS0_CHOCR	R7QAJ5_CHOCR	R7QIS0	R7QAJ5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.950
R7QIS0_CHOCR	R7QBI4_CHOCR	R7QIS0	R7QBI4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.900