(56 nodes) Nucleosome, and PKMTs methylate histone lysines network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q496_CHOCR	Uncharacterized protein. (357 aa)
	R7Q4J4_CHOCR	H15 domain-containing protein. (159 aa)
	R7Q535_CHOCR	Uncharacterized protein. (490 aa)
	R7Q6Z2_CHOCR	Uncharacterized protein. (395 aa)
	R7Q790_CHOCR	Uncharacterized protein. (490 aa)
	R7Q7G7_CHOCR	Uncharacterized protein. (222 aa)
	R7Q7L4_CHOCR	Uncharacterized protein. (1033 aa)
	R7Q7M7_CHOCR	Uncharacterized protein. (218 aa)
	R7Q7P2_CHOCR	Uncharacterized protein. (360 aa)
	R7Q9P8_CHOCR	Chromatin assembly factor 1 55 kDa subunit. (446 aa)
	R7QA01_CHOCR	Uncharacterized protein. (396 aa)
	R7QA63_CHOCR	Histone H2A; Belongs to the histone H2A family. (149 aa)
	R7QAX5_CHOCR	Uncharacterized protein. (390 aa)
	R7QBE4_CHOCR	WD_REPEATS_REGION domain-containing protein. (449 aa)
	R7QBQ3_CHOCR	Uncharacterized protein. (1799 aa)
	R7QC82_CHOCR	Acyl_transf_3 domain-containing protein. (678 aa)
	R7QCC8_CHOCR	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (424 aa)
	R7QCE6_CHOCR	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	R7QCI8_CHOCR	Histone H3; Belongs to the histone H3 family. (136 aa)
	R7QD76_CHOCR	Similar to Histone H3. (173 aa)
	R7QDD7_CHOCR	Histone H2B; Belongs to the histone H2B family. (126 aa)
	R7QE36_CHOCR	Uncharacterized protein. (259 aa)
	R7QEN4_CHOCR	Uncharacterized protein. (450 aa)
	R7QF57_CHOCR	Uncharacterized protein. (655 aa)
	R7QF99_CHOCR	Histone H2A; Belongs to the histone H2A family. (122 aa)
	R7QFN3_CHOCR	JmjC domain-containing protein. (185 aa)
	R7QFN8_CHOCR	Uncharacterized protein. (1151 aa)
	R7QG05_CHOCR	PHD-type domain-containing protein. (236 aa)
	R7QGN1_CHOCR	Uncharacterized protein. (2211 aa)
	R7QGP9_CHOCR	Uncharacterized protein. (441 aa)
	R7QJA4_CHOCR	Uncharacterized protein. (489 aa)
	R7QJL3_CHOCR	Uncharacterized protein. (151 aa)
	R7QJP4_CHOCR	Uncharacterized protein. (151 aa)
	R7QKP3_CHOCR	MYND-type domain-containing protein. (461 aa)
	R7QKR8_CHOCR	WD_REPEATS_REGION domain-containing protein. (476 aa)
	R7QMB6_CHOCR	Deacetylase sirtuin-type domain-containing protein. (566 aa)
	R7QMS2_CHOCR	Uncharacterized protein. (87 aa)
	R7QP62_CHOCR	Uncharacterized protein. (487 aa)
	R7QP64_CHOCR	Uncharacterized protein. (328 aa)
	R7QPD0_CHOCR	Histone H3; Belongs to the histone H3 family. (136 aa)
	R7QQ41_CHOCR	Histone H2A; Belongs to the histone H2A family. (128 aa)
	R7QQA5_CHOCR	Uncharacterized protein. (617 aa)
	R7QQF3_CHOCR	Uncharacterized protein. (161 aa)
	R7QQF5_CHOCR	Enhancer of zeste1. (487 aa)
	R7QQL2_CHOCR	VEFS-Box domain-containing protein. (304 aa)
	R7QR30_CHOCR	Uncharacterized protein. (293 aa)
	R7QR58_CHOCR	Histone H2B; Belongs to the histone H2B family. (125 aa)
	R7QRS4_CHOCR	Uncharacterized protein. (1188 aa)
	R7QS39_CHOCR	VEFS-Box domain-containing protein. (650 aa)
	R7QS43_CHOCR	Deacetylase sirtuin-type domain-containing protein. (272 aa)
	R7QSK3_CHOCR	SET domain-containing protein. (588 aa)
	R7QTM2_CHOCR	SET domain-containing protein. (749 aa)
	R7QTU5_CHOCR	Uncharacterized protein. (870 aa)
	R7QUA3_CHOCR	PLCXc domain-containing protein. (139 aa)
	R7QUJ5_CHOCR	Uncharacterized protein. (482 aa)
	S0F310_CHOCR	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q496_CHOCR	R7Q535_CHOCR	R7Q496	R7Q535	Uncharacterized protein.	Uncharacterized protein.	0.706
R7Q496_CHOCR	R7QBQ3_CHOCR	R7Q496	R7QBQ3	Uncharacterized protein.	Uncharacterized protein.	0.706
R7Q496_CHOCR	R7QCE6_CHOCR	R7Q496	R7QCE6	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.451
R7Q496_CHOCR	R7QF57_CHOCR	R7Q496	R7QF57	Uncharacterized protein.	Uncharacterized protein.	0.889
R7Q496_CHOCR	R7QF99_CHOCR	R7Q496	R7QF99	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.429
R7Q496_CHOCR	R7QQ41_CHOCR	R7Q496	R7QQ41	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.429
R7Q496_CHOCR	S0F310_CHOCR	R7Q496	S0F310	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.451
R7Q4J4_CHOCR	R7QA63_CHOCR	R7Q4J4	R7QA63	H15 domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.718
R7Q4J4_CHOCR	R7QCE6_CHOCR	R7Q4J4	R7QCE6	H15 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.848
R7Q4J4_CHOCR	R7QDD7_CHOCR	R7Q4J4	R7QDD7	H15 domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.667
R7Q4J4_CHOCR	R7QF99_CHOCR	R7Q4J4	R7QF99	H15 domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.772
R7Q4J4_CHOCR	R7QQ41_CHOCR	R7Q4J4	R7QQ41	H15 domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.772
R7Q4J4_CHOCR	R7QR58_CHOCR	R7Q4J4	R7QR58	H15 domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.667
R7Q4J4_CHOCR	S0F310_CHOCR	R7Q4J4	S0F310	H15 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.848
R7Q535_CHOCR	R7Q496_CHOCR	R7Q535	R7Q496	Uncharacterized protein.	Uncharacterized protein.	0.706
R7Q535_CHOCR	R7Q6Z2_CHOCR	R7Q535	R7Q6Z2	Uncharacterized protein.	Uncharacterized protein.	0.706
R7Q535_CHOCR	R7Q790_CHOCR	R7Q535	R7Q790	Uncharacterized protein.	Uncharacterized protein.	0.430
R7Q535_CHOCR	R7Q7G7_CHOCR	R7Q535	R7Q7G7	Uncharacterized protein.	Uncharacterized protein.	0.430
R7Q535_CHOCR	R7Q7L4_CHOCR	R7Q535	R7Q7L4	Uncharacterized protein.	Uncharacterized protein.	0.419
R7Q535_CHOCR	R7Q7M7_CHOCR	R7Q535	R7Q7M7	Uncharacterized protein.	Uncharacterized protein.	0.430