(12 nodes) Golgi transport complex, and GARP complex network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q5B6_CHOCR	Cog4 domain-containing protein. (561 aa)
	R7Q721_CHOCR	Uncharacterized protein. (897 aa)
	R7Q983_CHOCR	Vps54 domain-containing protein. (815 aa)
	R7QBV0_CHOCR	Uncharacterized protein. (725 aa)
	R7QBZ7_CHOCR	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (588 aa)
	R7QDC7_CHOCR	Uncharacterized protein. (806 aa)
	R7QDY9_CHOCR	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (607 aa)
	R7QE47_CHOCR	Uncharacterized protein. (893 aa)
	R7QJZ4_CHOCR	Uncharacterized protein. (599 aa)
	R7QMG4_CHOCR	Uncharacterized protein. (685 aa)
	R7QUT4_CHOCR	Uncharacterized protein. (707 aa)
	R7QVA5_CHOCR	Syntaxin; Belongs to the syntaxin family. (322 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q5B6_CHOCR	R7Q721_CHOCR	R7Q5B6	R7Q721	Cog4 domain-containing protein.	Uncharacterized protein.	0.996
R7Q5B6_CHOCR	R7Q983_CHOCR	R7Q5B6	R7Q983	Cog4 domain-containing protein.	Vps54 domain-containing protein.	0.836
R7Q5B6_CHOCR	R7QBV0_CHOCR	R7Q5B6	R7QBV0	Cog4 domain-containing protein.	Uncharacterized protein.	0.751
R7Q5B6_CHOCR	R7QBZ7_CHOCR	R7Q5B6	R7QBZ7	Cog4 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.992
R7Q5B6_CHOCR	R7QDC7_CHOCR	R7Q5B6	R7QDC7	Cog4 domain-containing protein.	Uncharacterized protein.	0.988
R7Q5B6_CHOCR	R7QDY9_CHOCR	R7Q5B6	R7QDY9	Cog4 domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.837
R7Q5B6_CHOCR	R7QE47_CHOCR	R7Q5B6	R7QE47	Cog4 domain-containing protein.	Uncharacterized protein.	0.984
R7Q5B6_CHOCR	R7QJZ4_CHOCR	R7Q5B6	R7QJZ4	Cog4 domain-containing protein.	Uncharacterized protein.	0.984
R7Q5B6_CHOCR	R7QMG4_CHOCR	R7Q5B6	R7QMG4	Cog4 domain-containing protein.	Uncharacterized protein.	0.984
R7Q5B6_CHOCR	R7QUT4_CHOCR	R7Q5B6	R7QUT4	Cog4 domain-containing protein.	Uncharacterized protein.	0.995
R7Q5B6_CHOCR	R7QVA5_CHOCR	R7Q5B6	R7QVA5	Cog4 domain-containing protein.	Syntaxin; Belongs to the syntaxin family.	0.840
R7Q721_CHOCR	R7Q5B6_CHOCR	R7Q721	R7Q5B6	Uncharacterized protein.	Cog4 domain-containing protein.	0.996
R7Q721_CHOCR	R7Q983_CHOCR	R7Q721	R7Q983	Uncharacterized protein.	Vps54 domain-containing protein.	0.831
R7Q721_CHOCR	R7QBV0_CHOCR	R7Q721	R7QBV0	Uncharacterized protein.	Uncharacterized protein.	0.754
R7Q721_CHOCR	R7QBZ7_CHOCR	R7Q721	R7QBZ7	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.996
R7Q721_CHOCR	R7QDC7_CHOCR	R7Q721	R7QDC7	Uncharacterized protein.	Uncharacterized protein.	0.991
R7Q721_CHOCR	R7QDY9_CHOCR	R7Q721	R7QDY9	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.798
R7Q721_CHOCR	R7QE47_CHOCR	R7Q721	R7QE47	Uncharacterized protein.	Uncharacterized protein.	0.989
R7Q721_CHOCR	R7QJZ4_CHOCR	R7Q721	R7QJZ4	Uncharacterized protein.	Uncharacterized protein.	0.986
R7Q721_CHOCR	R7QMG4_CHOCR	R7Q721	R7QMG4	Uncharacterized protein.	Uncharacterized protein.	0.991