(15 nodes) Mixed, incl. Peptidase S26, and Prolyl oligopeptidase family network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q5M1_CHOCR	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (601 aa)
	R7Q6Y8_CHOCR	Mitochondrial inner membrane protease subunit. (259 aa)
	R7Q8G1_CHOCR	Uncharacterized protein. (778 aa)
	R7Q9K3_CHOCR	Uncharacterized protein. (784 aa)
	R7Q9L2_CHOCR	Peptidase_M3 domain-containing protein. (707 aa)
	R7QA50_CHOCR	Mitochondrial inner membrane protease subunit. (177 aa)
	R7QEU0_CHOCR	Presequence protease. (996 aa)
	R7QGV8_CHOCR	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family. (186 aa)
	R7QH25_CHOCR	Uncharacterized protein. (1290 aa)
	R7QJ36_CHOCR	Peptidase_S9 domain-containing protein. (856 aa)
	R7QJ38_CHOCR	Uncharacterized protein; Belongs to the peptidase M16 family. (1000 aa)
	R7QNS5_CHOCR	Uncharacterized protein. (718 aa)
	R7QPN7_CHOCR	Signal peptidase I. (161 aa)
	R7QQ86_CHOCR	Uncharacterized protein. (323 aa)
	S0F3W6_CHOCR	Uncharacterized protein. (177 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q6Y8_CHOCR	S0F3W6_CHOCR	R7Q6Y8	S0F3W6	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.796
R7Q9K3_CHOCR	R7QJ38_CHOCR	R7Q9K3	R7QJ38	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.507
R7Q9K3_CHOCR	R7QPN7_CHOCR	R7Q9K3	R7QPN7	Uncharacterized protein.	Signal peptidase I.	0.703
R7Q9L2_CHOCR	R7QEU0_CHOCR	R7Q9L2	R7QEU0	Peptidase_M3 domain-containing protein.	Presequence protease.	0.533
R7Q9L2_CHOCR	R7QGV8_CHOCR	R7Q9L2	R7QGV8	Peptidase_M3 domain-containing protein.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.506
R7Q9L2_CHOCR	R7QH25_CHOCR	R7Q9L2	R7QH25	Peptidase_M3 domain-containing protein.	Uncharacterized protein.	0.416
R7Q9L2_CHOCR	R7QJ38_CHOCR	R7Q9L2	R7QJ38	Peptidase_M3 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.468
R7Q9L2_CHOCR	R7QQ86_CHOCR	R7Q9L2	R7QQ86	Peptidase_M3 domain-containing protein.	Uncharacterized protein.	0.452
R7QA50_CHOCR	S0F3W6_CHOCR	R7QA50	S0F3W6	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.796
R7QEU0_CHOCR	R7Q9L2_CHOCR	R7QEU0	R7Q9L2	Presequence protease.	Peptidase_M3 domain-containing protein.	0.533
R7QEU0_CHOCR	R7QJ38_CHOCR	R7QEU0	R7QJ38	Presequence protease.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.522
R7QGV8_CHOCR	R7Q9L2_CHOCR	R7QGV8	R7Q9L2	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Peptidase_M3 domain-containing protein.	0.506
R7QGV8_CHOCR	R7QQ86_CHOCR	R7QGV8	R7QQ86	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.462
R7QH25_CHOCR	R7Q9L2_CHOCR	R7QH25	R7Q9L2	Uncharacterized protein.	Peptidase_M3 domain-containing protein.	0.416
R7QH25_CHOCR	R7QJ38_CHOCR	R7QH25	R7QJ38	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.444
R7QH25_CHOCR	R7QPN7_CHOCR	R7QH25	R7QPN7	Uncharacterized protein.	Signal peptidase I.	0.411
R7QJ36_CHOCR	R7QJ38_CHOCR	R7QJ36	R7QJ38	Peptidase_S9 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.507
R7QJ36_CHOCR	R7QPN7_CHOCR	R7QJ36	R7QPN7	Peptidase_S9 domain-containing protein.	Signal peptidase I.	0.703
R7QJ38_CHOCR	R7Q9K3_CHOCR	R7QJ38	R7Q9K3	Uncharacterized protein; Belongs to the peptidase M16 family.	Uncharacterized protein.	0.507
R7QJ38_CHOCR	R7Q9L2_CHOCR	R7QJ38	R7Q9L2	Uncharacterized protein; Belongs to the peptidase M16 family.	Peptidase_M3 domain-containing protein.	0.468