(13 nodes) Small-subunit processome, and Regulation of transcription by RNA polymerase I network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q457_CHOCR	Uncharacterized protein. (447 aa)
	R7Q520_CHOCR	WD_REPEATS_REGION domain-containing protein. (522 aa)
	R7Q7Q5_CHOCR	Uncharacterized protein. (696 aa)
	R7QAF4_CHOCR	BP28CT domain-containing protein. (1635 aa)
	R7QBY5_CHOCR	Box C/D snoRNP component Nop56. (502 aa)
	R7QF79_CHOCR	WD_REPEATS_REGION domain-containing protein. (934 aa)
	R7QLK0_CHOCR	rRNA 2'-O-methyltransferase fibrillarin 2. (337 aa)
	R7QMG1_CHOCR	Nucleolar protein nop56, putative. (575 aa)
	R7QMV7_CHOCR	WD_REPEATS_REGION domain-containing protein. (251 aa)
	R7QPH4_CHOCR	WD40-repeat containing protein. (947 aa)
	R7QQR4_CHOCR	Utp12 domain-containing protein. (357 aa)
	R7QS99_CHOCR	WD_REPEATS_REGION domain-containing protein. (607 aa)
	R7QVG7_CHOCR	WD40-repeat containing protein. (941 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q457_CHOCR	R7Q520_CHOCR	R7Q457	R7Q520	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
R7Q457_CHOCR	R7Q7Q5_CHOCR	R7Q457	R7Q7Q5	Uncharacterized protein.	Uncharacterized protein.	0.998
R7Q457_CHOCR	R7QAF4_CHOCR	R7Q457	R7QAF4	Uncharacterized protein.	BP28CT domain-containing protein.	0.999
R7Q457_CHOCR	R7QBY5_CHOCR	R7Q457	R7QBY5	Uncharacterized protein.	Box C/D snoRNP component Nop56.	0.998
R7Q457_CHOCR	R7QF79_CHOCR	R7Q457	R7QF79	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
R7Q457_CHOCR	R7QLK0_CHOCR	R7Q457	R7QLK0	Uncharacterized protein.	rRNA 2'-O-methyltransferase fibrillarin 2.	0.996
R7Q457_CHOCR	R7QMG1_CHOCR	R7Q457	R7QMG1	Uncharacterized protein.	Nucleolar protein nop56, putative.	0.998
R7Q457_CHOCR	R7QMV7_CHOCR	R7Q457	R7QMV7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
R7Q457_CHOCR	R7QPH4_CHOCR	R7Q457	R7QPH4	Uncharacterized protein.	WD40-repeat containing protein.	0.999
R7Q457_CHOCR	R7QQR4_CHOCR	R7Q457	R7QQR4	Uncharacterized protein.	Utp12 domain-containing protein.	0.999
R7Q457_CHOCR	R7QS99_CHOCR	R7Q457	R7QS99	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
R7Q457_CHOCR	R7QVG7_CHOCR	R7Q457	R7QVG7	Uncharacterized protein.	WD40-repeat containing protein.	0.999
R7Q520_CHOCR	R7Q457_CHOCR	R7Q520	R7Q457	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
R7Q520_CHOCR	R7Q7Q5_CHOCR	R7Q520	R7Q7Q5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
R7Q520_CHOCR	R7QAF4_CHOCR	R7Q520	R7QAF4	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
R7Q520_CHOCR	R7QBY5_CHOCR	R7Q520	R7QBY5	WD_REPEATS_REGION domain-containing protein.	Box C/D snoRNP component Nop56.	0.998
R7Q520_CHOCR	R7QF79_CHOCR	R7Q520	R7QF79	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
R7Q520_CHOCR	R7QLK0_CHOCR	R7Q520	R7QLK0	WD_REPEATS_REGION domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin 2.	0.995
R7Q520_CHOCR	R7QMG1_CHOCR	R7Q520	R7QMG1	WD_REPEATS_REGION domain-containing protein.	Nucleolar protein nop56, putative.	0.997
R7Q520_CHOCR	R7QMV7_CHOCR	R7Q520	R7QMV7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999