(30 nodes) RNA polymerase II, holoenzyme network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QB84_CHOCR	RNA_pol_L_2 domain-containing protein. (127 aa)
	R7QC81_CHOCR	Helicase ATP-binding domain-containing protein. (777 aa)
	R7QDA7_CHOCR	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (192 aa)
	R7QDE6_CHOCR	Uncharacterized protein. (224 aa)
	R7QDZ3_CHOCR	RNA polymerase I, II, III common subunit. (217 aa)
	R7QGF0_CHOCR	Helicase ATP-binding domain-containing protein. (768 aa)
	R7QGI6_CHOCR	WD_REPEATS_REGION domain-containing protein. (608 aa)
	R7QIC0_CHOCR	TFIIE domain-containing protein. (427 aa)
	R7Q1N9_CHOCR	RPOL4c domain-containing protein. (162 aa)
	R7QID0_CHOCR	Plus3 domain-containing protein. (415 aa)
	R7QJK0_CHOCR	Bromo domain-containing protein. (1609 aa)
	R7QKK4_CHOCR	TAF4 domain-containing protein. (1027 aa)
	R7QKQ8_CHOCR	Uncharacterized protein. (452 aa)
	R7QLI7_CHOCR	MAT1 domain-containing protein. (251 aa)
	R7QPA8_CHOCR	TFIIF_beta domain-containing protein. (229 aa)
	R7QRW5_CHOCR	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	R7QTB8_CHOCR	Uncharacterized protein. (515 aa)
	R7Q6F3_CHOCR	Uncharacterized protein. (192 aa)
	R7Q6V5_CHOCR	TATA-box binding protein-associated factor 12. (141 aa)
	R7Q6W0_CHOCR	Uncharacterized protein. (343 aa)
	R7Q6Z9_CHOCR	TAF4 domain-containing protein. (918 aa)
	R7Q4E5_CHOCR	TAFII28 domain-containing protein. (209 aa)
	R7Q7Q8_CHOCR	General transcription factor IIH subunit. (421 aa)
	R7Q0U1_CHOCR	Uncharacterized protein. (579 aa)
	R7Q867_CHOCR	Uncharacterized protein. (152 aa)
	R7QA03_CHOCR	Uncharacterized protein. (751 aa)
	R7QAB3_CHOCR	Uncharacterized protein. (131 aa)
	R7QB16_CHOCR	Uncharacterized protein. (862 aa)
	R7QB25_CHOCR	TAF domain-containing protein. (544 aa)
	R7Q414_CHOCR	Uncharacterized protein. (1498 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q0U1_CHOCR	R7Q1N9_CHOCR	R7Q0U1	R7Q1N9	Uncharacterized protein.	RPOL4c domain-containing protein.	0.892
R7Q0U1_CHOCR	R7Q867_CHOCR	R7Q0U1	R7Q867	Uncharacterized protein.	Uncharacterized protein.	0.914
R7Q0U1_CHOCR	R7QA03_CHOCR	R7Q0U1	R7QA03	Uncharacterized protein.	Uncharacterized protein.	0.997
R7Q0U1_CHOCR	R7QAB3_CHOCR	R7Q0U1	R7QAB3	Uncharacterized protein.	Uncharacterized protein.	0.906
R7Q0U1_CHOCR	R7QB84_CHOCR	R7Q0U1	R7QB84	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.852
R7Q0U1_CHOCR	R7QDA7_CHOCR	R7Q0U1	R7QDA7	Uncharacterized protein.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.881
R7Q0U1_CHOCR	R7QDZ3_CHOCR	R7Q0U1	R7QDZ3	Uncharacterized protein.	RNA polymerase I, II, III common subunit.	0.892
R7Q0U1_CHOCR	R7QID0_CHOCR	R7Q0U1	R7QID0	Uncharacterized protein.	Plus3 domain-containing protein.	0.990
R7Q0U1_CHOCR	R7QKQ8_CHOCR	R7Q0U1	R7QKQ8	Uncharacterized protein.	Uncharacterized protein.	0.998
R7Q0U1_CHOCR	R7QPA8_CHOCR	R7Q0U1	R7QPA8	Uncharacterized protein.	TFIIF_beta domain-containing protein.	0.421
R7Q1N9_CHOCR	R7Q0U1_CHOCR	R7Q1N9	R7Q0U1	RPOL4c domain-containing protein.	Uncharacterized protein.	0.892
R7Q1N9_CHOCR	R7Q414_CHOCR	R7Q1N9	R7Q414	RPOL4c domain-containing protein.	Uncharacterized protein.	0.826
R7Q1N9_CHOCR	R7Q4E5_CHOCR	R7Q1N9	R7Q4E5	RPOL4c domain-containing protein.	TAFII28 domain-containing protein.	0.849
R7Q1N9_CHOCR	R7Q6F3_CHOCR	R7Q1N9	R7Q6F3	RPOL4c domain-containing protein.	Uncharacterized protein.	0.667
R7Q1N9_CHOCR	R7Q6V5_CHOCR	R7Q1N9	R7Q6V5	RPOL4c domain-containing protein.	TATA-box binding protein-associated factor 12.	0.843
R7Q1N9_CHOCR	R7Q6W0_CHOCR	R7Q1N9	R7Q6W0	RPOL4c domain-containing protein.	Uncharacterized protein.	0.970
R7Q1N9_CHOCR	R7Q6Z9_CHOCR	R7Q1N9	R7Q6Z9	RPOL4c domain-containing protein.	TAF4 domain-containing protein.	0.667
R7Q1N9_CHOCR	R7Q7Q8_CHOCR	R7Q1N9	R7Q7Q8	RPOL4c domain-containing protein.	General transcription factor IIH subunit.	0.974
R7Q1N9_CHOCR	R7Q867_CHOCR	R7Q1N9	R7Q867	RPOL4c domain-containing protein.	Uncharacterized protein.	0.997
R7Q1N9_CHOCR	R7QA03_CHOCR	R7Q1N9	R7QA03	RPOL4c domain-containing protein.	Uncharacterized protein.	0.893