(10 nodes) snRNA binding network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q6T1_CHOCR	Putative splicing factor 3B, subunit 3, SF3B3. (1289 aa)
	R7Q753_CHOCR	Similar to putative C-type U1 snRNP. (139 aa)
	R7QAW1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QCR0_CHOCR	Probable U2 small nuclear ribonucleoprotein B. (107 aa)
	R7QE84_CHOCR	Pre-mRNA processing 8 protein, PRP8. (2422 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (184 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (129 aa)
	R7QNC1_CHOCR	Probable U2 small nuclear ribonucleoprotein A. (117 aa)
	R7QQB1_CHOCR	Elongation factor Tu GTP-binding domain-containing protein 2. (1025 aa)
	R7Q235_CHOCR	RRM domain-containing protein. (240 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	LSM4-2	R7QHR4	R7QMG7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.901
LSM4	R7Q235_CHOCR	R7QHR4	R7Q235	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.541
LSM4	R7Q6T1_CHOCR	R7QHR4	R7Q6T1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative splicing factor 3B, subunit 3, SF3B3.	0.767
LSM4	R7Q753_CHOCR	R7QHR4	R7Q753	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Similar to putative C-type U1 snRNP.	0.593
LSM4	R7QAW1_CHOCR	R7QHR4	R7QAW1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein A.	0.593
LSM4	R7QCR0_CHOCR	R7QHR4	R7QCR0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein B.	0.736
LSM4	R7QE84_CHOCR	R7QHR4	R7QE84	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing 8 protein, PRP8.	0.870
LSM4	R7QNC1_CHOCR	R7QHR4	R7QNC1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein A.	0.593
LSM4	R7QQB1_CHOCR	R7QHR4	R7QQB1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor Tu GTP-binding domain-containing protein 2.	0.857
LSM4-2	LSM4	R7QMG7	R7QHR4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.901
LSM4-2	R7Q235_CHOCR	R7QMG7	R7Q235	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.541
LSM4-2	R7Q6T1_CHOCR	R7QMG7	R7Q6T1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative splicing factor 3B, subunit 3, SF3B3.	0.767
LSM4-2	R7Q753_CHOCR	R7QMG7	R7Q753	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Similar to putative C-type U1 snRNP.	0.593
LSM4-2	R7QAW1_CHOCR	R7QMG7	R7QAW1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein A.	0.593
LSM4-2	R7QCR0_CHOCR	R7QMG7	R7QCR0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein B.	0.736
LSM4-2	R7QE84_CHOCR	R7QMG7	R7QE84	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing 8 protein, PRP8.	0.870
LSM4-2	R7QNC1_CHOCR	R7QMG7	R7QNC1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable U2 small nuclear ribonucleoprotein A.	0.593
LSM4-2	R7QQB1_CHOCR	R7QMG7	R7QQB1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor Tu GTP-binding domain-containing protein 2.	0.857
R7Q235_CHOCR	LSM4	R7Q235	R7QHR4	RRM domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.541
R7Q235_CHOCR	LSM4-2	R7Q235	R7QMG7	RRM domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.541