(40 nodes) Cytosolic large ribosomal subunit network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QCS4_CHOCR	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (182 aa)
	R7Q2V7_CHOCR	Uncharacterized protein. (41 aa)
	R7Q325_CHOCR	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (390 aa)
	R7Q341_CHOCR	Uncharacterized protein. (112 aa)
	R7Q674_CHOCR	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (144 aa)
	R7Q689_CHOCR	Ribosomal protein L37; Binds to the 23S rRNA. (93 aa)
	R7Q6A7_CHOCR	Uncharacterized protein. (68 aa)
	R7Q712_CHOCR	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (212 aa)
	R7Q780_CHOCR	Uncharacterized protein. (41 aa)
	R7Q7E4_CHOCR	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (120 aa)
	R7Q7T3_CHOCR	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (97 aa)
	R7Q857_CHOCR	Uncharacterized protein. (117 aa)
	R7Q8B4_CHOCR	Ribosomal_L2_C domain-containing protein. (253 aa)
	R7Q8F1_CHOCR	Uncharacterized protein. (198 aa)
	R7QBF5_CHOCR	60S ribosomal protein L14. (135 aa)
	R7QC29_CHOCR	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	R7QC50_CHOCR	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (71 aa)
	R7QCC6_CHOCR	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (142 aa)
	R7QCQ3_CHOCR	60S ribosomal protein L7. (273 aa)
	R7QD96_CHOCR	60S ribosomal protein L30. (111 aa)
	R7QDX6_CHOCR	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (106 aa)
	R7QES3_CHOCR	Uncharacterized protein. (41 aa)
	R7QG40_CHOCR	60S ribosomal protein L7a. (268 aa)
	R7QHE3_CHOCR	Uncharacterized protein. (234 aa)
	R7QHG8_CHOCR	60S ribosomal protein L27A; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	R7QIG4_CHOCR	Ribosomal protein L10, partial. (127 aa)
	R7QJN9_CHOCR	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (216 aa)
	R7QK75_CHOCR	Ribosomal_L18_c domain-containing protein. (296 aa)
	R7QKP4_CHOCR	Ribosomal protein L26. (144 aa)
	R7QKR3_CHOCR	Uncharacterized protein. (68 aa)
	R7QMV0_CHOCR	Uncharacterized protein. (68 aa)
	R7QMW1_CHOCR	Component of cytosolic 80S ribosome and 60S large subunit. (366 aa)
	R7QN89_CHOCR	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (184 aa)
	R7QNJ5_CHOCR	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (143 aa)
	R7QPF2_CHOCR	60S acidic ribosomal protein P0. (328 aa)
	R7QPF3_CHOCR	60S ribosomal protein L39. (51 aa)
	R7QQ26_CHOCR	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (193 aa)
	R7QRL1_CHOCR	Uncharacterized protein. (41 aa)
	R7QRP4_CHOCR	Uncharacterized protein. (159 aa)
	R7QUX6_CHOCR	60S ribosomal protein L31. (116 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q2V7_CHOCR	R7Q325_CHOCR	R7Q2V7	R7Q325	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.826
R7Q2V7_CHOCR	R7Q674_CHOCR	R7Q2V7	R7Q674	Uncharacterized protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.850
R7Q2V7_CHOCR	R7Q689_CHOCR	R7Q2V7	R7Q689	Uncharacterized protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.828
R7Q2V7_CHOCR	R7Q712_CHOCR	R7Q2V7	R7Q712	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.826
R7Q2V7_CHOCR	R7Q7E4_CHOCR	R7Q2V7	R7Q7E4	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.845
R7Q2V7_CHOCR	R7Q7T3_CHOCR	R7Q2V7	R7Q7T3	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.806
R7Q2V7_CHOCR	R7Q857_CHOCR	R7Q2V7	R7Q857	Uncharacterized protein.	Uncharacterized protein.	0.829
R7Q2V7_CHOCR	R7Q8B4_CHOCR	R7Q2V7	R7Q8B4	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.818
R7Q2V7_CHOCR	R7Q8F1_CHOCR	R7Q2V7	R7Q8F1	Uncharacterized protein.	Uncharacterized protein.	0.824
R7Q2V7_CHOCR	R7QBF5_CHOCR	R7Q2V7	R7QBF5	Uncharacterized protein.	60S ribosomal protein L14.	0.846
R7Q2V7_CHOCR	R7QC29_CHOCR	R7Q2V7	R7QC29	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.821
R7Q2V7_CHOCR	R7QC50_CHOCR	R7Q2V7	R7QC50	Uncharacterized protein.	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.836
R7Q2V7_CHOCR	R7QCC6_CHOCR	R7Q2V7	R7QCC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.821
R7Q2V7_CHOCR	R7QCQ3_CHOCR	R7Q2V7	R7QCQ3	Uncharacterized protein.	60S ribosomal protein L7.	0.838
R7Q2V7_CHOCR	R7QCS4_CHOCR	R7Q2V7	R7QCS4	Uncharacterized protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.800
R7Q2V7_CHOCR	R7QD96_CHOCR	R7Q2V7	R7QD96	Uncharacterized protein.	60S ribosomal protein L30.	0.843
R7Q2V7_CHOCR	R7QDX6_CHOCR	R7Q2V7	R7QDX6	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.834
R7Q2V7_CHOCR	R7QG40_CHOCR	R7Q2V7	R7QG40	Uncharacterized protein.	60S ribosomal protein L7a.	0.833
R7Q2V7_CHOCR	R7QHE3_CHOCR	R7Q2V7	R7QHE3	Uncharacterized protein.	Uncharacterized protein.	0.841
R7Q2V7_CHOCR	R7QHG8_CHOCR	R7Q2V7	R7QHG8	Uncharacterized protein.	60S ribosomal protein L27A; Belongs to the universal ribosomal protein uL15 family.	0.838