(20 nodes) Cytosolic small ribosomal subunit network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q7L5_CHOCR	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (124 aa)
	R7QUY8_CHOCR	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (112 aa)
	R7QTX2_CHOCR	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (316 aa)
	R7QQB5_CHOCR	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (265 aa)
	R7QL07_CHOCR	30S ribosomal protein S1. (388 aa)
	R7QJT8_CHOCR	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	R7QJQ7_CHOCR	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (230 aa)
	R7QIX6_CHOCR	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (137 aa)
	R7QI22_CHOCR	40S ribosomal protein S28. (65 aa)
	R7QHH9_CHOCR	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	R7QGG9_CHOCR	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (204 aa)
	R7QGC6_CHOCR	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (143 aa)
	R7QFT3_CHOCR	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	R7QEX3_CHOCR	Uncharacterized protein. (147 aa)
	R7QB31_CHOCR	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (154 aa)
	R7QA04_CHOCR	Ribosom_S30AE_C domain-containing protein. (202 aa)
	rps1	30S ribosomal protein S1. (264 aa)
	R7Q7A5_CHOCR	S10_plectin domain-containing protein. (146 aa)
	R7Q562_CHOCR	eIF2A domain-containing protein. (361 aa)
	R7Q4Z1_CHOCR	40S ribosomal protein S11. (153 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q4Z1_CHOCR	R7Q7A5_CHOCR	R7Q4Z1	R7Q7A5	40S ribosomal protein S11.	S10_plectin domain-containing protein.	0.999
R7Q4Z1_CHOCR	R7Q7L5_CHOCR	R7Q4Z1	R7Q7L5	40S ribosomal protein S11.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
R7Q4Z1_CHOCR	R7QA04_CHOCR	R7Q4Z1	R7QA04	40S ribosomal protein S11.	Ribosom_S30AE_C domain-containing protein.	0.834
R7Q4Z1_CHOCR	R7QB31_CHOCR	R7Q4Z1	R7QB31	40S ribosomal protein S11.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
R7Q4Z1_CHOCR	R7QEX3_CHOCR	R7Q4Z1	R7QEX3	40S ribosomal protein S11.	Uncharacterized protein.	0.999
R7Q4Z1_CHOCR	R7QFT3_CHOCR	R7Q4Z1	R7QFT3	40S ribosomal protein S11.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
R7Q4Z1_CHOCR	R7QGC6_CHOCR	R7Q4Z1	R7QGC6	40S ribosomal protein S11.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
R7Q4Z1_CHOCR	R7QGG9_CHOCR	R7Q4Z1	R7QGG9	40S ribosomal protein S11.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
R7Q4Z1_CHOCR	R7QHH9_CHOCR	R7Q4Z1	R7QHH9	40S ribosomal protein S11.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.993
R7Q4Z1_CHOCR	R7QI22_CHOCR	R7Q4Z1	R7QI22	40S ribosomal protein S11.	40S ribosomal protein S28.	0.999
R7Q4Z1_CHOCR	R7QIX6_CHOCR	R7Q4Z1	R7QIX6	40S ribosomal protein S11.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.993
R7Q4Z1_CHOCR	R7QJQ7_CHOCR	R7Q4Z1	R7QJQ7	40S ribosomal protein S11.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
R7Q4Z1_CHOCR	R7QJT8_CHOCR	R7Q4Z1	R7QJT8	40S ribosomal protein S11.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
R7Q4Z1_CHOCR	R7QL07_CHOCR	R7Q4Z1	R7QL07	40S ribosomal protein S11.	30S ribosomal protein S1.	0.834
R7Q4Z1_CHOCR	R7QQB5_CHOCR	R7Q4Z1	R7QQB5	40S ribosomal protein S11.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
R7Q4Z1_CHOCR	R7QTX2_CHOCR	R7Q4Z1	R7QTX2	40S ribosomal protein S11.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
R7Q4Z1_CHOCR	R7QUY8_CHOCR	R7Q4Z1	R7QUY8	40S ribosomal protein S11.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
R7Q4Z1_CHOCR	rps1	R7Q4Z1	M5DER1	40S ribosomal protein S11.	30S ribosomal protein S1.	0.834
R7Q7A5_CHOCR	R7Q4Z1_CHOCR	R7Q7A5	R7Q4Z1	S10_plectin domain-containing protein.	40S ribosomal protein S11.	0.999
R7Q7A5_CHOCR	R7Q7L5_CHOCR	R7Q7A5	R7Q7L5	S10_plectin domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999