(4 nodes) SMN-Sm protein complex network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QA43_CHOCR	Uncharacterized protein; Belongs to the DEAD box helicase family. (687 aa)
	R7QLE2_CHOCR	Small nuclear ribonucleoprotein G. (76 aa)
	R7QQT6_CHOCR	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	R7QB82_CHOCR	WD40-repeat containing protein. (390 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7QA43_CHOCR	R7QB82_CHOCR	R7QA43	R7QB82	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD40-repeat containing protein.	0.698
R7QA43_CHOCR	R7QLE2_CHOCR	R7QA43	R7QLE2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.725
R7QA43_CHOCR	R7QQT6_CHOCR	R7QA43	R7QQT6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.733
R7QB82_CHOCR	R7QA43_CHOCR	R7QB82	R7QA43	WD40-repeat containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.698
R7QLE2_CHOCR	R7QA43_CHOCR	R7QLE2	R7QA43	Small nuclear ribonucleoprotein G.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.725
R7QLE2_CHOCR	R7QQT6_CHOCR	R7QLE2	R7QQT6	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3.	0.999
R7QQT6_CHOCR	R7QA43_CHOCR	R7QQT6	R7QA43	Small nuclear ribonucleoprotein Sm D3.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.733
R7QQT6_CHOCR	R7QLE2_CHOCR	R7QQT6	R7QLE2	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.999