(17 nodes) Regulation of protein catabolic process network (Chondrus crispus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q8W3_CHOCR	Uncharacterized protein. (1025 aa)
	R7Q959_CHOCR	Uncharacterized protein. (164 aa)
	R7QAJ5_CHOCR	Uncharacterized protein. (734 aa)
	R7QB90_CHOCR	TMF_TATA_bd domain-containing protein. (385 aa)
	R7Q839_CHOCR	WD_REPEATS_REGION domain-containing protein. (222 aa)
	R7QDL2_CHOCR	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family. (425 aa)
	R7QDS8_CHOCR	PITH domain-containing protein. (233 aa)
	R7QIE5_CHOCR	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family. (1050 aa)
	R7QIH7_CHOCR	NTR domain-containing protein. (153 aa)
	R7QIX7_CHOCR	Uncharacterized protein. (417 aa)
	R7QL54_CHOCR	WD40-repeat containing protein. (658 aa)
	R7QL83_CHOCR	26S proteasome subunit; Belongs to the AAA ATPase family. (403 aa)
	R7QNR1_CHOCR	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family. (413 aa)
	R7QPQ6_CHOCR	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family. (411 aa)
	R7QQF7_CHOCR	WD40-repeat containing protein. (386 aa)
	R7QQN8_CHOCR	NTR domain-containing protein. (203 aa)
	R7QR36_CHOCR	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family. (441 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q839_CHOCR	R7QDL2_CHOCR	R7Q839	R7QDL2	WD_REPEATS_REGION domain-containing protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.460
R7Q839_CHOCR	R7QL83_CHOCR	R7Q839	R7QL83	WD_REPEATS_REGION domain-containing protein.	26S proteasome subunit; Belongs to the AAA ATPase family.	0.465
R7Q839_CHOCR	R7QNR1_CHOCR	R7Q839	R7QNR1	WD_REPEATS_REGION domain-containing protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.402
R7Q839_CHOCR	R7QPQ6_CHOCR	R7Q839	R7QPQ6	WD_REPEATS_REGION domain-containing protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.489
R7Q839_CHOCR	R7QR36_CHOCR	R7Q839	R7QR36	WD_REPEATS_REGION domain-containing protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.460
R7Q8W3_CHOCR	R7QDL2_CHOCR	R7Q8W3	R7QDL2	Uncharacterized protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.998
R7Q8W3_CHOCR	R7QIE5_CHOCR	R7Q8W3	R7QIE5	Uncharacterized protein.	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family.	0.999
R7Q8W3_CHOCR	R7QL83_CHOCR	R7Q8W3	R7QL83	Uncharacterized protein.	26S proteasome subunit; Belongs to the AAA ATPase family.	0.999
R7Q8W3_CHOCR	R7QNR1_CHOCR	R7Q8W3	R7QNR1	Uncharacterized protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.997
R7Q8W3_CHOCR	R7QPQ6_CHOCR	R7Q8W3	R7QPQ6	Uncharacterized protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.998
R7Q8W3_CHOCR	R7QR36_CHOCR	R7Q8W3	R7QR36	Uncharacterized protein.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.998
R7QDL2_CHOCR	R7Q839_CHOCR	R7QDL2	R7Q839	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	WD_REPEATS_REGION domain-containing protein.	0.460
R7QDL2_CHOCR	R7Q8W3_CHOCR	R7QDL2	R7Q8W3	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.998
R7QDL2_CHOCR	R7QIE5_CHOCR	R7QDL2	R7QIE5	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family.	0.997
R7QDL2_CHOCR	R7QL54_CHOCR	R7QDL2	R7QL54	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	WD40-repeat containing protein.	0.460
R7QDL2_CHOCR	R7QL83_CHOCR	R7QDL2	R7QL83	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	26S proteasome subunit; Belongs to the AAA ATPase family.	0.999
R7QDL2_CHOCR	R7QNR1_CHOCR	R7QDL2	R7QNR1	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.998
R7QDL2_CHOCR	R7QPQ6_CHOCR	R7QDL2	R7QPQ6	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.999
R7QDL2_CHOCR	R7QQF7_CHOCR	R7QDL2	R7QQF7	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	WD40-repeat containing protein.	0.460
R7QDL2_CHOCR	R7QR36_CHOCR	R7QDL2	R7QR36	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	26S proteasome ATP-dependent regulatory subunit; Belongs to the AAA ATPase family.	0.999