(5 nodes) Clathrin-coated vesicle membrane network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QEW2_CHOCR	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (128 aa)
	R7QV90_CHOCR	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family. (208 aa)
	R7QS34_CHOCR	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1105 aa)
	R7QRD7_CHOCR	Adaptin_N domain-containing protein. (269 aa)
	R7QG62_CHOCR	AP-1 complex subunit gamma. (923 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7QEW2_CHOCR	R7QG62_CHOCR	R7QEW2	R7QG62	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma.	0.997
R7QEW2_CHOCR	R7QRD7_CHOCR	R7QEW2	R7QRD7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Adaptin_N domain-containing protein.	0.689
R7QEW2_CHOCR	R7QS34_CHOCR	R7QEW2	R7QS34	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.689
R7QG62_CHOCR	R7QEW2_CHOCR	R7QG62	R7QEW2	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.997
R7QG62_CHOCR	R7QRD7_CHOCR	R7QG62	R7QRD7	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.918
R7QG62_CHOCR	R7QS34_CHOCR	R7QG62	R7QS34	AP-1 complex subunit gamma.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.918
R7QG62_CHOCR	R7QV90_CHOCR	R7QG62	R7QV90	AP-1 complex subunit gamma.	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	0.496
R7QRD7_CHOCR	R7QEW2_CHOCR	R7QRD7	R7QEW2	Adaptin_N domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.689
R7QRD7_CHOCR	R7QG62_CHOCR	R7QRD7	R7QG62	Adaptin_N domain-containing protein.	AP-1 complex subunit gamma.	0.918
R7QS34_CHOCR	R7QEW2_CHOCR	R7QS34	R7QEW2	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.689
R7QS34_CHOCR	R7QG62_CHOCR	R7QS34	R7QG62	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	AP-1 complex subunit gamma.	0.918
R7QV90_CHOCR	R7QG62_CHOCR	R7QV90	R7QG62	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	AP-1 complex subunit gamma.	0.496