(12 nodes) 90S preribosome network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q387_CHOCR	Uncharacterized protein. (1052 aa)
	R7Q3J5_CHOCR	WD40-repeat containing protein. (1026 aa)
	R7Q7Q5_CHOCR	Uncharacterized protein. (696 aa)
	R7QAD3_CHOCR	WD_REPEATS_REGION domain-containing protein. (1069 aa)
	R7QF52_CHOCR	Uncharacterized protein. (1018 aa)
	R7QHE7_CHOCR	Uncharacterized protein. (651 aa)
	R7QJP6_CHOCR	Uncharacterized protein. (362 aa)
	R7QLV9_CHOCR	S4 RNA-binding domain-containing protein. (70 aa)
	R7QPH4_CHOCR	WD40-repeat containing protein. (947 aa)
	R7QRH8_CHOCR	CBF domain-containing protein. (486 aa)
	R7QS99_CHOCR	WD_REPEATS_REGION domain-containing protein. (607 aa)
	R7QVG7_CHOCR	WD40-repeat containing protein. (941 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q387_CHOCR	R7Q3J5_CHOCR	R7Q387	R7Q3J5	Uncharacterized protein.	WD40-repeat containing protein.	0.982
R7Q387_CHOCR	R7Q7Q5_CHOCR	R7Q387	R7Q7Q5	Uncharacterized protein.	Uncharacterized protein.	0.998
R7Q387_CHOCR	R7QAD3_CHOCR	R7Q387	R7QAD3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.982
R7Q387_CHOCR	R7QF52_CHOCR	R7Q387	R7QF52	Uncharacterized protein.	Uncharacterized protein.	0.949
R7Q387_CHOCR	R7QHE7_CHOCR	R7Q387	R7QHE7	Uncharacterized protein.	Uncharacterized protein.	0.999
R7Q387_CHOCR	R7QLV9_CHOCR	R7Q387	R7QLV9	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.991
R7Q387_CHOCR	R7QPH4_CHOCR	R7Q387	R7QPH4	Uncharacterized protein.	WD40-repeat containing protein.	0.999
R7Q387_CHOCR	R7QRH8_CHOCR	R7Q387	R7QRH8	Uncharacterized protein.	CBF domain-containing protein.	0.995
R7Q387_CHOCR	R7QS99_CHOCR	R7Q387	R7QS99	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
R7Q387_CHOCR	R7QVG7_CHOCR	R7Q387	R7QVG7	Uncharacterized protein.	WD40-repeat containing protein.	0.999
R7Q3J5_CHOCR	R7Q387_CHOCR	R7Q3J5	R7Q387	WD40-repeat containing protein.	Uncharacterized protein.	0.982
R7Q3J5_CHOCR	R7Q7Q5_CHOCR	R7Q3J5	R7Q7Q5	WD40-repeat containing protein.	Uncharacterized protein.	0.941
R7Q3J5_CHOCR	R7QF52_CHOCR	R7Q3J5	R7QF52	WD40-repeat containing protein.	Uncharacterized protein.	0.826
R7Q3J5_CHOCR	R7QHE7_CHOCR	R7Q3J5	R7QHE7	WD40-repeat containing protein.	Uncharacterized protein.	0.939
R7Q3J5_CHOCR	R7QLV9_CHOCR	R7Q3J5	R7QLV9	WD40-repeat containing protein.	S4 RNA-binding domain-containing protein.	0.914
R7Q3J5_CHOCR	R7QPH4_CHOCR	R7Q3J5	R7QPH4	WD40-repeat containing protein.	WD40-repeat containing protein.	0.994
R7Q3J5_CHOCR	R7QRH8_CHOCR	R7Q3J5	R7QRH8	WD40-repeat containing protein.	CBF domain-containing protein.	0.952
R7Q3J5_CHOCR	R7QS99_CHOCR	R7Q3J5	R7QS99	WD40-repeat containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
R7Q3J5_CHOCR	R7QVG7_CHOCR	R7Q3J5	R7QVG7	WD40-repeat containing protein.	WD40-repeat containing protein.	0.992
R7Q7Q5_CHOCR	R7Q387_CHOCR	R7Q7Q5	R7Q387	Uncharacterized protein.	Uncharacterized protein.	0.998