(76 nodes) Zinc finger, RING/FYVE/PHD-type network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QLH4_CHOCR	RING-type domain-containing protein. (318 aa)
	R7QL73_CHOCR	Uncharacterized protein. (386 aa)
	R7QKV4_CHOCR	Uncharacterized protein. (379 aa)
	R7QK57_CHOCR	RBR-type E3 ubiquitin transferase. (441 aa)
	R7QK21_CHOCR	U-box domain-containing protein. (1133 aa)
	R7QJZ8_CHOCR	PHD-type domain-containing protein. (687 aa)
	R7QJV3_CHOCR	Uncharacterized protein. (573 aa)
	R7QJR2_CHOCR	Uncharacterized protein. (704 aa)
	R7QJC8_CHOCR	RING-type domain-containing protein. (356 aa)
	R7QJ61_CHOCR	RING-type domain-containing protein. (296 aa)
	R7QJ55_CHOCR	Uncharacterized protein. (1573 aa)
	R7QIS1_CHOCR	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (572 aa)
	R7QI87_CHOCR	PHD-type domain-containing protein. (1623 aa)
	R7QI65_CHOCR	RING-type domain-containing protein. (1484 aa)
	R7QGZ6_CHOCR	RING-type domain-containing protein. (236 aa)
	R7QG77_CHOCR	RING-type domain-containing protein. (556 aa)
	R7QG05_CHOCR	PHD-type domain-containing protein. (236 aa)
	R7QFN8_CHOCR	Uncharacterized protein. (1151 aa)
	R7QFD8_CHOCR	RING-CH-type domain-containing protein. (1148 aa)
	R7QF15_CHOCR	RING-type domain-containing protein. (109 aa)
	R7QEN4_CHOCR	Uncharacterized protein. (450 aa)
	R7QEF7_CHOCR	Inhibitor of growth protein. (319 aa)
	R7QEF1_CHOCR	Uncharacterized protein. (256 aa)
	R7QEA0_CHOCR	RING-type domain-containing protein. (264 aa)
	R7QE64_CHOCR	Uncharacterized protein. (327 aa)
	R7QDT1_CHOCR	RING-type domain-containing protein. (376 aa)
	R7QDR6_CHOCR	Snrnp assembly factor and ubiquitin specific protease 39. (474 aa)
	R7QDP8_CHOCR	Uncharacterized protein. (221 aa)
	R7QDB3_CHOCR	RING-type domain-containing protein. (838 aa)
	R7QD73_CHOCR	Uncharacterized protein. (982 aa)
	R7QCK0_CHOCR	RING-type domain-containing protein. (121 aa)
	R7QCH6_CHOCR	Pex2_Pex12 domain-containing protein. (437 aa)
	R7QCG2_CHOCR	RING-type domain-containing protein. (169 aa)
	R7QCB7_CHOCR	LisH domain-containing protein. (396 aa)
	R7QC47_CHOCR	Uncharacterized protein. (702 aa)
	R7QBY7_CHOCR	RING-type domain-containing protein. (175 aa)
	R7QAQ4_CHOCR	Uncharacterized protein. (917 aa)
	R7QA79_CHOCR	Uncharacterized protein. (1362 aa)
	R7Q9V1_CHOCR	PHD-type domain-containing protein. (804 aa)
	R7Q9R4_CHOCR	Uncharacterized protein. (280 aa)
	R7Q9M9_CHOCR	SP-RING-type domain-containing protein. (720 aa)
	R7Q9H2_CHOCR	Putative Pre-mRNA-processing factor 19. (531 aa)
	R7Q8Z4_CHOCR	RING-type domain-containing protein. (276 aa)
	R7Q8L1_CHOCR	E3 ubiquitin-protein ligase. (704 aa)
	R7Q8C7_CHOCR	Uncharacterized protein. (1140 aa)
	R7Q803_CHOCR	RING-type domain-containing protein. (732 aa)
	R7Q7Z4_CHOCR	PHD-type domain-containing protein. (559 aa)
	R7Q7W7_CHOCR	RING-type domain-containing protein. (297 aa)
	R7Q7U4_CHOCR	PREDICTED: nitric oxide synthase-interacting protein-like. (296 aa)
	R7Q7Q8_CHOCR	General transcription factor IIH subunit. (421 aa)
	R7Q778_CHOCR	RING-type domain-containing protein. (602 aa)
	R7Q5Y1_CHOCR	Uncharacterized protein. (667 aa)
	R7Q5P6_CHOCR	Ubiquitin carboxyl-terminal hydrolase. (849 aa)
	S0F3K3_CHOCR	Uncharacterized protein. (1321 aa)
	S0F2Z3_CHOCR	Uncharacterized protein. (215 aa)
	R7QVG0_CHOCR	RING-type domain-containing protein. (156 aa)
	R7QV20_CHOCR	RING-type domain-containing protein. (1452 aa)
	R7Q5N8_CHOCR	RING-type domain-containing protein. (425 aa)
	R7Q462_CHOCR	RING-type domain-containing protein. (156 aa)
	R7Q3D2_CHOCR	RING-type domain-containing protein. (616 aa)
	R7Q366_CHOCR	Uncharacterized protein. (386 aa)
	R7Q198_CHOCR	RING-type domain-containing protein. (574 aa)
	R7QUX9_CHOCR	RING-type domain-containing protein. (340 aa)
	R7QTP7_CHOCR	E3 ubiquitin ligase, putative. (542 aa)
	R7QS17_CHOCR	RING-type domain-containing protein. (648 aa)
	R7QRH4_CHOCR	SP-RING-type domain-containing protein. (250 aa)
	R7QRC3_CHOCR	RING-type domain-containing protein. (942 aa)
	R7QQP8_CHOCR	UBR-type domain-containing protein. (368 aa)
	R7QQL5_CHOCR	Uncharacterized protein. (580 aa)
	R7QQC8_CHOCR	RBR-type E3 ubiquitin transferase. (328 aa)
	R7QQ82_CHOCR	E3 ubiquitin protein ligase. (778 aa)
	R7QNI1_CHOCR	RING-box protein 1a. (119 aa)
	R7QNF2_CHOCR	zf-RING_UBOX domain-containing protein. (51 aa)
	R7QMT1_CHOCR	UBP-type domain-containing protein. (179 aa)
	R7QMA0_CHOCR	Uncharacterized protein. (999 aa)
	R7QLY7_CHOCR	Uncharacterized protein. (407 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q366_CHOCR	R7Q7Z4_CHOCR	R7Q366	R7Q7Z4	Uncharacterized protein.	PHD-type domain-containing protein.	0.473
R7Q366_CHOCR	R7QTP7_CHOCR	R7Q366	R7QTP7	Uncharacterized protein.	E3 ubiquitin ligase, putative.	0.533
R7Q5N8_CHOCR	R7Q7Z4_CHOCR	R7Q5N8	R7Q7Z4	RING-type domain-containing protein.	PHD-type domain-containing protein.	0.486
R7Q5P6_CHOCR	R7QDR6_CHOCR	R7Q5P6	R7QDR6	Ubiquitin carboxyl-terminal hydrolase.	Snrnp assembly factor and ubiquitin specific protease 39.	0.497
R7Q7Z4_CHOCR	R7Q366_CHOCR	R7Q7Z4	R7Q366	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7Q5N8_CHOCR	R7Q7Z4	R7Q5N8	PHD-type domain-containing protein.	RING-type domain-containing protein.	0.486
R7Q7Z4_CHOCR	R7Q9R4_CHOCR	R7Q7Z4	R7Q9R4	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7QA79_CHOCR	R7Q7Z4	R7QA79	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7QAQ4_CHOCR	R7Q7Z4	R7QAQ4	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7QC47_CHOCR	R7Q7Z4	R7QC47	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7QL73_CHOCR	R7Q7Z4	R7QL73	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	R7QLY7_CHOCR	R7Q7Z4	R7QLY7	PHD-type domain-containing protein.	Uncharacterized protein.	0.473
R7Q7Z4_CHOCR	S0F3K3_CHOCR	R7Q7Z4	S0F3K3	PHD-type domain-containing protein.	Uncharacterized protein.	0.470
R7Q8C7_CHOCR	R7QDB3_CHOCR	R7Q8C7	R7QDB3	Uncharacterized protein.	RING-type domain-containing protein.	0.420
R7Q8C7_CHOCR	R7QV20_CHOCR	R7Q8C7	R7QV20	Uncharacterized protein.	RING-type domain-containing protein.	0.540
R7Q9H2_CHOCR	R7QEF1_CHOCR	R7Q9H2	R7QEF1	Putative Pre-mRNA-processing factor 19.	Uncharacterized protein.	0.972
R7Q9M9_CHOCR	R7QI65_CHOCR	R7Q9M9	R7QI65	SP-RING-type domain-containing protein.	RING-type domain-containing protein.	0.531
R7Q9M9_CHOCR	R7QNI1_CHOCR	R7Q9M9	R7QNI1	SP-RING-type domain-containing protein.	RING-box protein 1a.	0.734
R7Q9M9_CHOCR	R7QRH4_CHOCR	R7Q9M9	R7QRH4	SP-RING-type domain-containing protein.	SP-RING-type domain-containing protein.	0.704
R7Q9M9_CHOCR	R7QTP7_CHOCR	R7Q9M9	R7QTP7	SP-RING-type domain-containing protein.	E3 ubiquitin ligase, putative.	0.676