(49 nodes) Zinc finger C2H2-type network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7QRB6_CHOCR	C2H2-type domain-containing protein. (155 aa)
	R7QRX7_CHOCR	C2H2-type domain-containing protein. (228 aa)
	R7QSV2_CHOCR	C2H2-type domain-containing protein. (142 aa)
	R7QSX5_CHOCR	C2H2-type domain-containing protein. (373 aa)
	R7QT12_CHOCR	Uncharacterized protein. (277 aa)
	R7QTH2_CHOCR	C2H2-type domain-containing protein. (175 aa)
	R7Q305_CHOCR	Uncharacterized protein. (372 aa)
	R7Q3E8_CHOCR	Uncharacterized protein. (147 aa)
	R7Q3T1_CHOCR	Uncharacterized protein. (291 aa)
	R7Q421_CHOCR	Uncharacterized protein. (232 aa)
	R7Q4W2_CHOCR	Uncharacterized protein. (664 aa)
	R7Q552_CHOCR	Uncharacterized protein. (347 aa)
	R7Q5B4_CHOCR	Uncharacterized protein. (124 aa)
	R7Q5E3_CHOCR	Matrin-type domain-containing protein. (475 aa)
	R7Q6B4_CHOCR	Zinc finger, matrin type 2, putative. (177 aa)
	R7Q6S0_CHOCR	C2H2-type domain-containing protein. (203 aa)
	R7Q753_CHOCR	Similar to putative C-type U1 snRNP. (139 aa)
	R7Q7C6_CHOCR	Uncharacterized protein. (677 aa)
	R7Q8Y2_CHOCR	C2H2-type domain-containing protein. (418 aa)
	R7Q914_CHOCR	C2H2-type domain-containing protein. (655 aa)
	R7Q9H5_CHOCR	Uncharacterized protein. (785 aa)
	R7Q0U7_CHOCR	Uncharacterized protein. (554 aa)
	R7Q9K5_CHOCR	Uncharacterized protein. (386 aa)
	R7QAX2_CHOCR	Uncharacterized protein. (617 aa)
	R7QB23_CHOCR	Uncharacterized protein. (215 aa)
	R7QBW0_CHOCR	Uncharacterized protein. (415 aa)
	R7QBY3_CHOCR	C2H2-type domain-containing protein. (927 aa)
	R7QCI9_CHOCR	Uncharacterized protein. (522 aa)
	R7QDB3_CHOCR	RING-type domain-containing protein. (838 aa)
	R7QED4_CHOCR	C2H2-type domain-containing protein. (262 aa)
	R7QF55_CHOCR	Uncharacterized protein. (584 aa)
	R7QFK6_CHOCR	Uncharacterized protein. (553 aa)
	R7QFS3_CHOCR	Matrin-type domain-containing protein. (258 aa)
	R7QI65_CHOCR	RING-type domain-containing protein. (1484 aa)
	R7QJ28_CHOCR	Uncharacterized protein. (694 aa)
	R7QJE9_CHOCR	C2H2-type domain-containing protein. (422 aa)
	R7QJH2_CHOCR	Uncharacterized protein. (735 aa)
	R7QJK6_CHOCR	Uncharacterized protein. (331 aa)
	R7QK30_CHOCR	C2H2-type domain-containing protein. (224 aa)
	R7QM54_CHOCR	Uncharacterized protein. (473 aa)
	R7QMI2_CHOCR	C2H2-type domain-containing protein. (272 aa)
	R7QMQ3_CHOCR	Uncharacterized protein. (661 aa)
	R7QMZ1_CHOCR	C2H2-type domain-containing protein. (88 aa)
	R7QNN3_CHOCR	Uncharacterized protein. (240 aa)
	R7QNS4_CHOCR	Uncharacterized protein. (232 aa)
	R7QPY9_CHOCR	zf-U1 domain-containing protein. (238 aa)
	R7QQC3_CHOCR	Uncharacterized protein. (314 aa)
	R7QQZ8_CHOCR	C2H2-type domain-containing protein. (657 aa)
	R7Q0F2_CHOCR	Uncharacterized protein. (518 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q5E3_CHOCR	R7Q6B4_CHOCR	R7Q5E3	R7Q6B4	Matrin-type domain-containing protein.	Zinc finger, matrin type 2, putative.	0.909
R7Q5E3_CHOCR	R7Q753_CHOCR	R7Q5E3	R7Q753	Matrin-type domain-containing protein.	Similar to putative C-type U1 snRNP.	0.932
R7Q5E3_CHOCR	R7Q8Y2_CHOCR	R7Q5E3	R7Q8Y2	Matrin-type domain-containing protein.	C2H2-type domain-containing protein.	0.683
R7Q5E3_CHOCR	R7QFS3_CHOCR	R7Q5E3	R7QFS3	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.999
R7Q6B4_CHOCR	R7Q5E3_CHOCR	R7Q6B4	R7Q5E3	Zinc finger, matrin type 2, putative.	Matrin-type domain-containing protein.	0.909
R7Q6B4_CHOCR	R7Q8Y2_CHOCR	R7Q6B4	R7Q8Y2	Zinc finger, matrin type 2, putative.	C2H2-type domain-containing protein.	0.441
R7Q6B4_CHOCR	R7QFS3_CHOCR	R7Q6B4	R7QFS3	Zinc finger, matrin type 2, putative.	Matrin-type domain-containing protein.	0.927
R7Q753_CHOCR	R7Q5E3_CHOCR	R7Q753	R7Q5E3	Similar to putative C-type U1 snRNP.	Matrin-type domain-containing protein.	0.932
R7Q753_CHOCR	R7QFS3_CHOCR	R7Q753	R7QFS3	Similar to putative C-type U1 snRNP.	Matrin-type domain-containing protein.	0.914
R7Q8Y2_CHOCR	R7Q5E3_CHOCR	R7Q8Y2	R7Q5E3	C2H2-type domain-containing protein.	Matrin-type domain-containing protein.	0.683
R7Q8Y2_CHOCR	R7Q6B4_CHOCR	R7Q8Y2	R7Q6B4	C2H2-type domain-containing protein.	Zinc finger, matrin type 2, putative.	0.441
R7Q8Y2_CHOCR	R7QFS3_CHOCR	R7Q8Y2	R7QFS3	C2H2-type domain-containing protein.	Matrin-type domain-containing protein.	0.691
R7QAX2_CHOCR	R7QSX5_CHOCR	R7QAX2	R7QSX5	Uncharacterized protein.	C2H2-type domain-containing protein.	0.659
R7QFS3_CHOCR	R7Q5E3_CHOCR	R7QFS3	R7Q5E3	Matrin-type domain-containing protein.	Matrin-type domain-containing protein.	0.999
R7QFS3_CHOCR	R7Q6B4_CHOCR	R7QFS3	R7Q6B4	Matrin-type domain-containing protein.	Zinc finger, matrin type 2, putative.	0.927
R7QFS3_CHOCR	R7Q753_CHOCR	R7QFS3	R7Q753	Matrin-type domain-containing protein.	Similar to putative C-type U1 snRNP.	0.914
R7QFS3_CHOCR	R7Q8Y2_CHOCR	R7QFS3	R7Q8Y2	Matrin-type domain-containing protein.	C2H2-type domain-containing protein.	0.691
R7QSX5_CHOCR	R7QAX2_CHOCR	R7QSX5	R7QAX2	C2H2-type domain-containing protein.	Uncharacterized protein.	0.659