(48 nodes) RNA degradation network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q265_CHOCR	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (683 aa)
	R7Q284_CHOCR	Sm-like protein, LSm3. (92 aa)
	R7Q2V0_CHOCR	Uncharacterized protein. (826 aa)
	R7Q2Z4_CHOCR	Superkiller viralicidic activity 2-like 2, putative. (1052 aa)
	R7Q340_CHOCR	KH_dom_type_1 domain-containing protein. (287 aa)
	R7Q3D8_CHOCR	Exosome component 10 Rrp6. (954 aa)
	R7Q3Q5_CHOCR	Polyphosphate kinase. (1054 aa)
	R7Q565_CHOCR	Uncharacterized protein. (262 aa)
	R7Q6M9_CHOCR	Superkiller viralicidic activity 2-like W. (1252 aa)
	R7Q6R5_CHOCR	Uncharacterized protein. (514 aa)
	R7Q6U6_CHOCR	Exosome component 4-like Rrp41-like. (202 aa)
	R7Q6Y6_CHOCR	Enolase. (413 aa)
	R7Q841_CHOCR	Endo/exonuclease/phosphatase domain-containing protein. (363 aa)
	R7Q866_CHOCR	Exosome component 5 Rrp46. (274 aa)
	R7Q8C7_CHOCR	Uncharacterized protein. (1140 aa)
	R7QAH6_CHOCR	Exosome component 1 Csl1. (189 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (213 aa)
	R7QBN9_CHOCR	Enolase. (510 aa)
	R7QBW5_CHOCR	Exosome component 4-like Rrp41-like. (274 aa)
	R7QD87_CHOCR	Uncharacterized protein. (294 aa)
	R7QDA9_CHOCR	Uncharacterized protein. (2244 aa)
	R7QDJ8_CHOCR	Chaperonine 60; Belongs to the chaperonin (HSP60) family. (577 aa)
	R7QED0_CHOCR	Exosome component 4-like Rrp41-like. (154 aa)
	R7QG59_CHOCR	Uncharacterized protein. (644 aa)
	R7QG79_CHOCR	Enolase. (441 aa)
	R7QGU5_CHOCR	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	R7QHJ3_CHOCR	KH_dom_type_1 domain-containing protein. (264 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (184 aa)
	R7QIU3_CHOCR	Chaperonine 60; Belongs to the chaperonin (HSP60) family. (585 aa)
	R7QJA2_CHOCR	Uncharacterized protein. (1493 aa)
	R7QJI3_CHOCR	Uncharacterized protein. (938 aa)
	R7QL29_CHOCR	Uncharacterized protein. (292 aa)
	R7QL61_CHOCR	S1 motif domain-containing protein. (834 aa)
	R7QM41_CHOCR	Exosome component 9 Rrp45. (423 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (129 aa)
	R7QMK3_CHOCR	Sm-like protein, LSm6. (97 aa)
	R7QNQ8_CHOCR	Nudix hydrolase domain-containing protein. (495 aa)
	R7QPG9_CHOCR	Exosome component 4-like Rrp41-like. (120 aa)
	R7QQ64_CHOCR	Cell differentiation protein rcd1. (286 aa)
	R7QQI6_CHOCR	Sm-like protein, LSm7. (234 aa)
	R7QQT9_CHOCR	Uncharacterized protein. (634 aa)
	R7QQX6_CHOCR	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (659 aa)
	R7QR21_CHOCR	Uncharacterized protein; Belongs to the DEAD box helicase family. (408 aa)
	R7QR64_CHOCR	USP domain-containing protein. (1255 aa)
	R7QRK3_CHOCR	NOT2_3_5 domain-containing protein. (470 aa)
	R7QRL2_CHOCR	Pyrophosphate-fructose-6-phosphate 1-phosphotransferase. (541 aa)
	R7QSH2_CHOCR	Uncharacterized protein; Belongs to the heat shock protein 70 family. (631 aa)
	R7QSX7_CHOCR	Exosome component 6 Mtr3. (264 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM4	R7QB24	R7QHR4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.965
LSM1	LSM4-2	R7QB24	R7QMG7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.965
LSM1	R7Q284_CHOCR	R7QB24	R7Q284	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm3.	0.997
LSM1	R7Q3Q5_CHOCR	R7QB24	R7Q3Q5	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Polyphosphate kinase.	0.816
LSM1	R7QDA9_CHOCR	R7QB24	R7QDA9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.461
LSM1	R7QGU5_CHOCR	R7QB24	R7QGU5	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
LSM1	R7QMK3_CHOCR	R7QB24	R7QMK3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm6.	0.997
LSM1	R7QNQ8_CHOCR	R7QB24	R7QNQ8	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Nudix hydrolase domain-containing protein.	0.911
LSM1	R7QQI6_CHOCR	R7QB24	R7QQI6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm-like protein, LSm7.	0.997
LSM1	R7QQX6_CHOCR	R7QB24	R7QQX6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.509
LSM1	R7QR21_CHOCR	R7QB24	R7QR21	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.995
LSM4	LSM1	R7QHR4	R7QB24	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.965
LSM4	LSM4-2	R7QHR4	R7QMG7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.901
LSM4	R7Q284_CHOCR	R7QHR4	R7Q284	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm3.	0.997
LSM4	R7Q3Q5_CHOCR	R7QHR4	R7Q3Q5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Polyphosphate kinase.	0.599
LSM4	R7QGU5_CHOCR	R7QHR4	R7QGU5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.996
LSM4	R7QMK3_CHOCR	R7QHR4	R7QMK3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm6.	0.996
LSM4	R7QNQ8_CHOCR	R7QHR4	R7QNQ8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.825
LSM4	R7QQI6_CHOCR	R7QHR4	R7QQI6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm-like protein, LSm7.	0.996
LSM4	R7QR21_CHOCR	R7QHR4	R7QR21	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.845