(32 nodes) Endocytosis network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q2K9_CHOCR	Uncharacterized protein. (224 aa)
	R7Q2S3_CHOCR	Arf-GAP domain-containing protein. (407 aa)
	R7Q4F6_CHOCR	Small GTPase. (191 aa)
	R7Q541_CHOCR	Vacuolar sorting protein SNF8. (176 aa)
	R7Q5A8_CHOCR	Heat Shock Protein 70, HSP70; Belongs to the heat shock protein 70 family. (656 aa)
	R7Q7W1_CHOCR	PIPK domain-containing protein. (687 aa)
	R7Q8N1_CHOCR	Arf-GAP domain-containing protein. (369 aa)
	R7QAD2_CHOCR	Uncharacterized protein. (177 aa)
	R7QAJ1_CHOCR	PLD2. (898 aa)
	R7QCA9_CHOCR	Uncharacterized protein. (431 aa)
	R7QCH3_CHOCR	Uncharacterized protein. (244 aa)
	R7QCT3_CHOCR	USP8_dimer domain-containing protein. (338 aa)
	R7QD69_CHOCR	Uncharacterized protein. (317 aa)
	R7QDY7_CHOCR	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1379 aa)
	R7QDY9_CHOCR	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (607 aa)
	R7QE58_CHOCR	Vacuolar protein sorting 4b; Belongs to the AAA ATPase family. (448 aa)
	R7QEG9_CHOCR	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (272 aa)
	R7QF46_CHOCR	AAA domain-containing protein; Belongs to the AAA ATPase family. (537 aa)
	R7QFI7_CHOCR	PX domain-containing protein. (605 aa)
	R7QFM4_CHOCR	Uncharacterized protein. (822 aa)
	R7QFS6_CHOCR	SEC7 domain-containing protein. (1742 aa)
	R7QG88_CHOCR	Uncharacterized protein. (858 aa)
	R7QGI4_CHOCR	BRO1 domain-containing protein. (765 aa)
	R7QHR5_CHOCR	Uncharacterized protein; Belongs to the VPS28 family. (240 aa)
	R7QJX3_CHOCR	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1776 aa)
	R7QLD3_CHOCR	SEC7 domain-containing protein. (1217 aa)
	R7QP55_CHOCR	Uncharacterized protein. (207 aa)
	R7QPW9_CHOCR	Uncharacterized protein. (625 aa)
	R7QQE1_CHOCR	Uncharacterized protein; Belongs to the AAA ATPase family. (464 aa)
	R7QS30_CHOCR	Uncharacterized protein. (192 aa)
	R7QSY4_CHOCR	GTP-binding protein yptV5. (206 aa)
	R7QT55_CHOCR	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (882 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q2K9_CHOCR	R7Q541_CHOCR	R7Q2K9	R7Q541	Uncharacterized protein.	Vacuolar sorting protein SNF8.	0.889
R7Q2K9_CHOCR	R7QAD2_CHOCR	R7Q2K9	R7QAD2	Uncharacterized protein.	Uncharacterized protein.	0.888
R7Q2K9_CHOCR	R7QCA9_CHOCR	R7Q2K9	R7QCA9	Uncharacterized protein.	Uncharacterized protein.	0.883
R7Q2K9_CHOCR	R7QCH3_CHOCR	R7Q2K9	R7QCH3	Uncharacterized protein.	Uncharacterized protein.	0.850
R7Q2K9_CHOCR	R7QCT3_CHOCR	R7Q2K9	R7QCT3	Uncharacterized protein.	USP8_dimer domain-containing protein.	0.678
R7Q2K9_CHOCR	R7QE58_CHOCR	R7Q2K9	R7QE58	Uncharacterized protein.	Vacuolar protein sorting 4b; Belongs to the AAA ATPase family.	0.917
R7Q2K9_CHOCR	R7QF46_CHOCR	R7Q2K9	R7QF46	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.917
R7Q2K9_CHOCR	R7QGI4_CHOCR	R7Q2K9	R7QGI4	Uncharacterized protein.	BRO1 domain-containing protein.	0.429
R7Q2K9_CHOCR	R7QHR5_CHOCR	R7Q2K9	R7QHR5	Uncharacterized protein.	Uncharacterized protein; Belongs to the VPS28 family.	0.867
R7Q2K9_CHOCR	R7QQE1_CHOCR	R7Q2K9	R7QQE1	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.917
R7Q2S3_CHOCR	R7Q4F6_CHOCR	R7Q2S3	R7Q4F6	Arf-GAP domain-containing protein.	Small GTPase.	0.484
R7Q2S3_CHOCR	R7Q8N1_CHOCR	R7Q2S3	R7Q8N1	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.995
R7Q2S3_CHOCR	R7QFS6_CHOCR	R7Q2S3	R7QFS6	Arf-GAP domain-containing protein.	SEC7 domain-containing protein.	0.847
R7Q2S3_CHOCR	R7QP55_CHOCR	R7Q2S3	R7QP55	Arf-GAP domain-containing protein.	Uncharacterized protein.	0.484
R7Q2S3_CHOCR	R7QPW9_CHOCR	R7Q2S3	R7QPW9	Arf-GAP domain-containing protein.	Uncharacterized protein.	0.946
R7Q4F6_CHOCR	R7Q2S3_CHOCR	R7Q4F6	R7Q2S3	Small GTPase.	Arf-GAP domain-containing protein.	0.484
R7Q4F6_CHOCR	R7Q5A8_CHOCR	R7Q4F6	R7Q5A8	Small GTPase.	Heat Shock Protein 70, HSP70; Belongs to the heat shock protein 70 family.	0.465
R7Q4F6_CHOCR	R7Q8N1_CHOCR	R7Q4F6	R7Q8N1	Small GTPase.	Arf-GAP domain-containing protein.	0.455
R7Q4F6_CHOCR	R7QD69_CHOCR	R7Q4F6	R7QD69	Small GTPase.	Uncharacterized protein.	0.475
R7Q4F6_CHOCR	R7QDY7_CHOCR	R7Q4F6	R7QDY7	Small GTPase.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.587