STRINGSTRING
PEPE_0745 PEPE_0745 PEPE_0738 PEPE_0738 greA greA PEPE_0720 PEPE_0720 PEPE_0714 PEPE_0714 PEPE_0696 PEPE_0696 nrdR nrdR mutM mutM polA polA PEPE_0685 PEPE_0685 argR argR PEPE_0670 PEPE_0670 PEPE_0549 PEPE_0549 PEPE_0546 PEPE_0546 PEPE_0540 PEPE_0540 PEPE_0534 PEPE_0534 PEPE_0531 PEPE_0531 PEPE_0527 PEPE_0527 PEPE_0523 PEPE_0523 PEPE_0520 PEPE_0520 PEPE_0511 PEPE_0511 PEPE_0497 PEPE_0497 PEPE_0492 PEPE_0492 PEPE_0472 PEPE_0472 PEPE_0457 PEPE_0457 whiA whiA uvrA uvrA uvrB uvrB PEPE_0431 PEPE_0431 PEPE_0415 PEPE_0415 PEPE_0414 PEPE_0414 PEPE_0408 PEPE_0408 PEPE_0404 PEPE_0404 PEPE_0394 PEPE_0394 PEPE_0362 PEPE_0362 PEPE_0352 PEPE_0352 PEPE_0350 PEPE_0350 PEPE_0327 PEPE_0327 PEPE_0292 PEPE_0292 PEPE_0280 PEPE_0280 PEPE_0272 PEPE_0272 PEPE_0261 PEPE_0261 PEPE_0255 PEPE_0255 PEPE_0220 PEPE_0220 PEPE_0201 PEPE_0201 PEPE_0186 PEPE_0186 PEPE_0176 PEPE_0176 PEPE_0175 PEPE_0175 PEPE_0154 PEPE_0154 PEPE_0122 PEPE_0122 PEPE_0119 PEPE_0119 PEPE_0114 PEPE_0114 PEPE_0084 PEPE_0084 PEPE_0060 PEPE_0060 PEPE_0036 PEPE_0036 PEPE_0020 PEPE_0020 PEPE_0017 PEPE_0017 PEPE_0012 PEPE_0012 PEPE_0008 PEPE_0008 gyrA gyrA gyrB gyrB recF recF PEPE_0002 PEPE_0002 dnaA dnaA PEPE_1842 PEPE_1842 rexB rexB addA addA PEPE_1829 PEPE_1829 PEPE_1828 PEPE_1828 PEPE_1823 PEPE_1823 PEPE_1809 PEPE_1809 PEPE_1805 PEPE_1805 PEPE_1797 PEPE_1797 PEPE_1782 PEPE_1782 PEPE_1777 PEPE_1777 PEPE_1756 PEPE_1756 PEPE_1733 PEPE_1733 PEPE_1728 PEPE_1728 PEPE_1723 PEPE_1723 PEPE_1717 PEPE_1717 PEPE_1707 PEPE_1707 PEPE_1706 PEPE_1706 PEPE_1700 PEPE_1700 PEPE_1695 PEPE_1695 PEPE_1679 PEPE_1679 PEPE_1646 PEPE_1646 PEPE_1632 PEPE_1632 PEPE_1613 PEPE_1613 ligA ligA PEPE_1599 PEPE_1599 PEPE_1594 PEPE_1594 PEPE_1557 PEPE_1557 mfd mfd PEPE_1527 PEPE_1527 radA radA nusG nusG dnaX dnaX PEPE_1483 PEPE_1483 recR recR rex rex PEPE_1428 PEPE_1428 rpoB rpoB rpoC rpoC rpoA rpoA PEPE_1384 PEPE_1384 PEPE_1379 PEPE_1379 PEPE_1372 PEPE_1372 PEPE_1365 PEPE_1365 PEPE_1354 PEPE_1354 PEPE_1346 PEPE_1346 greA-2 greA-2 PEPE_1338 PEPE_1338 PEPE_1298 PEPE_1298 PEPE_1279 PEPE_1279 recA recA mutS mutS mutL mutL ruvA ruvA ruvB ruvB dinB dinB mutS2 mutS2 PEPE_1250 PEPE_1250 PEPE_1243 PEPE_1243 PEPE_1240 PEPE_1240 PEPE_1236 PEPE_1236 PEPE_1231 PEPE_1231 PEPE_1194 PEPE_1194 mraZ mraZ recD2 recD2 PEPE_1161 PEPE_1161 PEPE_1151 PEPE_1151 PEPE_1148 PEPE_1148 uvrC uvrC nfo nfo dnaG dnaG sigA sigA xerD xerD PEPE_1077 PEPE_1077 PEPE_1057 PEPE_1057 PEPE_1050 PEPE_1050 PEPE_1038 PEPE_1038 PEPE_1034 PEPE_1034 PEPE_1032 PEPE_1032 PEPE_1021 PEPE_1021 PEPE_1019 PEPE_1019 PEPE_0970 PEPE_0970 PEPE_0969 PEPE_0969 topA topA xerC xerC parE parE parC parC dinG dinG hrcA hrcA polC polC lexA lexA smc smc priA priA rpoZ rpoZ PEPE_0823 PEPE_0823 argR-2 argR-2 PEPE_0810 PEPE_0810 PEPE_0760 PEPE_0760 PEPE_0759 PEPE_0759 PEPE_0758 PEPE_0758 PEPE_0752 PEPE_0752 PEPE_0748 PEPE_0748
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
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second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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PEPE_0745Integrase; Belongs to the 'phage' integrase family. (379 aa)
PEPE_0738Glutamine synthetase repressor. (121 aa)
greATranscription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (160 aa)
PEPE_0720Predicted transcriptional regulator. (110 aa)
PEPE_0714DNA-binding response regulator, OmpR family (Rec-wHTH domains). (228 aa)
PEPE_0696Response regulator of the LytR/AlgR family. (243 aa)
nrdRPredicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (157 aa)
mutMDNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (275 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (887 aa)
PEPE_0685DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. (638 aa)
argRTranscriptional regulator, ArgR family; Regulates arginine biosynthesis genes. (152 aa)
PEPE_0670CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (223 aa)
PEPE_0549Transcriptional regulator, AraC family. (250 aa)
PEPE_0546Predicted transcriptional regulator. (155 aa)
PEPE_0540Integrase; Belongs to the 'phage' integrase family. (384 aa)
PEPE_0534Hypothetical protein. (400 aa)
PEPE_0531Type II restriction endonuclease, MutH family. (492 aa)
PEPE_0527Transcriptional regulator. (94 aa)
PEPE_0523Transposase. (83 aa)
PEPE_0520Transcriptional regulator, LacI family. (326 aa)
PEPE_0511Transcriptional regulator, AraC family. (276 aa)
PEPE_0497Site-specific recombinase, DNA invertase Pin related proteins. (186 aa)
PEPE_0492Transcriptional regulator, PadR family. (176 aa)
PEPE_0472DNA polymerase III, epsilon subunit related 3'-5' exonuclease. (178 aa)
PEPE_0457RNA polymerase, sigma 54 subunit, RpoN/SigL. (438 aa)
whiAHypothetical protein; Involved in cell division and chromosome segregation. (309 aa)
uvrAExcinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (947 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (667 aa)
PEPE_0431DNA-binding response regulator, OmpR family (Rec-wHTH domains). (234 aa)
PEPE_0415Hypothetical protein. (218 aa)
PEPE_0414Transcriptional regulator, xre family. (104 aa)
PEPE_0408Crp-like transcriptional regulator. (227 aa)
PEPE_0404Superfamily I DNA and RNA helicase. (765 aa)
PEPE_0394Predicted transcriptional regulator. (237 aa)
PEPE_0362Transcriptional regulator, xre family. (140 aa)
PEPE_0352Transcriptional regulator, GntR family. (240 aa)
PEPE_0350BS_ykrK family protein. (176 aa)
PEPE_0327Transcriptional regulator, TetR family. (188 aa)
PEPE_0292Adenine/guanine phosphoribosyltransferase related PRPP-binding protein. (278 aa)
PEPE_0280Transcriptional regulator, GntR family. (231 aa)
PEPE_0272Transcriptional regulator. (170 aa)
PEPE_0261Transcriptional regulator, xre family. (274 aa)
PEPE_0255Superfamily I DNA and RNA helicase. (767 aa)
PEPE_0220Hypothetical protein. (339 aa)
PEPE_0201Transcriptional regulator, LacI family. (331 aa)
PEPE_0186Transcriptional regulator, MarR family. (383 aa)
PEPE_0176Transcriptional regulator, GntR family. (230 aa)
PEPE_0175Transcriptional regulator, GntR family. (245 aa)
PEPE_0154Transcriptional regulator, AraC family. (282 aa)
PEPE_0122Response regulator of the LytR/AlgR family. (149 aa)
PEPE_0119AraC-type DNA-binding transcriptional regulator. (242 aa)
PEPE_0114RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. (193 aa)
PEPE_0084Response regulator of the LytR/AlgR family. (248 aa)
PEPE_0060Transcriptional regulator, MerR family. (121 aa)
PEPE_0036BS_ykrK family protein. (152 aa)
PEPE_0020Transcriptional regulator, xre family. (190 aa)
PEPE_0017Transcriptional regulator. (167 aa)
PEPE_0012Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (465 aa)
PEPE_0008Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (175 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (843 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (648 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (374 aa)
PEPE_0002DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (379 aa)
dnaADNA replication ATPase initiation; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (446 aa)
PEPE_1842Hypothetical protein; Belongs to the UPF0246 family. (251 aa)
rexBDNA helicase/exodeoxyribonuclease V, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. (1192 aa)
addADNA helicase/exodeoxyribonuclease V, subunit A; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily. (1235 aa)
PEPE_1829Predicted transcriptional regulator. (64 aa)
PEPE_1828Hypothetical protein. (206 aa)
PEPE_1823Transcriptional regulator, PadR family. (106 aa)
PEPE_1809Transcriptional regulator, LacI family. (229 aa)
PEPE_1805Transcriptional regulator, GntR family. (240 aa)
PEPE_1797DNA-binding response regulator, OmpR family (Rec-wHTH domains). (233 aa)
PEPE_1782BS_ykrK family protein. (181 aa)
PEPE_1777Transcriptional regulator, GntR family. (237 aa)
PEPE_1756Transcriptional regulator, GntR family. (244 aa)
PEPE_1733DNA-binding response regulator (Rec-wHTH domains). (191 aa)
PEPE_1728Rad3-related DNA helicase. (783 aa)
PEPE_1723Chromosome segregation DNA-binding protein; Belongs to the ParB family. (283 aa)
PEPE_1717DNA-binding response regulator, OmpR family (Rec-wHTH domains). (229 aa)
PEPE_1707Site-specific recombinase, DNA invertase Pin related proteins. (186 aa)
PEPE_1706Hypothetical protein. (217 aa)
PEPE_1700Transcriptional regulator, LacI family. (332 aa)
PEPE_1695cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (217 aa)
PEPE_1679Transcriptional regulator, TetR family. (211 aa)
PEPE_1646Predicted transcriptional regulator. (150 aa)
PEPE_1632Rec (receiver) domain signal transduction protein. (281 aa)
PEPE_1613Exonuclease III. (251 aa)
ligANAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (675 aa)
PEPE_1599Transcriptional regulator, AraC family. (384 aa)
PEPE_1594Predicted transcriptional regulator. (152 aa)
PEPE_1557Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. (120 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1165 aa)
PEPE_1527Transcriptional regulator, GntR family. (233 aa)
radADNA replication and repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (456 aa)
nusGTranscription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (181 aa)
dnaXDNA polymerase III, gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (581 aa)
PEPE_1483Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (104 aa)
recRDNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa)
rexAT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (208 aa)
PEPE_1428Transcriptional repressor of class III stress genes; Belongs to the CtsR family. (154 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1212 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)
PEPE_1384Transcriptional regulator, xre family. (68 aa)
PEPE_1379DNA or RNA helicase of superfamily II. (950 aa)
PEPE_1372ATP-dependent DNA helicase PcrA. (757 aa)
PEPE_1365Restriction endonuclease. (295 aa)
PEPE_1354DNA-binding response regulator, OmpR family (Rec-wHTH domains). (240 aa)
PEPE_1346Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters. (109 aa)
greA-2Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (154 aa)
PEPE_1338Transcriptional regulator, TetR family. (216 aa)
PEPE_1298Recombination protein MgsA. (425 aa)
PEPE_1279Xre-like DNA-binding protein. (289 aa)
recARecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (352 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (873 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (645 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (195 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (337 aa)
dinBNucleotidyltransferase/DNA polymerase for DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (374 aa)
mutS2MutS family ATPase; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (785 aa)
PEPE_1250Transcriptional regulator, LacI family. (334 aa)
PEPE_1243Nucleotidyltransferase/DNA polymerase for DNA repair; Belongs to the DNA polymerase type-Y family. (429 aa)
PEPE_1240Hypothetical protein. (245 aa)
PEPE_1236Competence protein ComGC. (101 aa)
PEPE_1231Adenine-specific DNA methylase. (334 aa)
PEPE_1194DNA segregation ATPase FtsK/SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family. (783 aa)
mraZHypothetical protein, MraZ; Belongs to the MraZ family. (143 aa)
recD2ATP-dependent DNA helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (814 aa)
PEPE_1161RNA binding protein, RRM domain. (71 aa)
PEPE_1151DNA uptake protein related DNA-binding protein. (235 aa)
PEPE_1148DNA polymerase III, delta subunit. (339 aa)
uvrCExcinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (594 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (296 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (620 aa)
sigARNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (379 aa)
xerDTyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (295 aa)
PEPE_1077Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa)
PEPE_1057Transcriptional regulator, AraC family. (298 aa)
PEPE_1050Transcriptional regulator. (281 aa)
PEPE_1038Integrase; Belongs to the 'phage' integrase family. (357 aa)
PEPE_1034Transcriptional regulator, xre family. (115 aa)
PEPE_1032Uncharacterized phage-encoded protein. (267 aa)
PEPE_1021Single-stranded DNA-binding protein. (132 aa)
PEPE_1019Hypothetical protein. (247 aa)
PEPE_0970Rossmann fold nucleotide-binding protein for DNA uptake. (286 aa)
PEPE_0969Transcriptional regulator, LacI family. (317 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (690 aa)
xerCTyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (301 aa)
parEDNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily. (679 aa)
parCDNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily. (817 aa)
dinGRad3-related DNA helicase; 3'-5' exonuclease. (929 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (346 aa)
polCDNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1437 aa)
lexATranscriptional regulator, xre family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (209 aa)
smcCondensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1176 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (806 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (69 aa)
PEPE_0823DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (558 aa)
argR-2Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes. (152 aa)
PEPE_0810Transcriptional regulator, TetR family. (209 aa)
PEPE_0760Replicative DNA helicase. (415 aa)
PEPE_0759Hypothetical protein. (294 aa)
PEPE_0758Single-strand binding protein. (132 aa)
PEPE_0752Phage anti-repressor protein. (241 aa)
PEPE_0748Transcriptional regulator, xre family. (116 aa)
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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