15 items (Pediococcus pentosaceus) - STRING interaction network

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Your Input:
	rpoE	DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (178 aa)
	PEPE_0114	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. (193 aa)
	PEPE_0457	RNA polymerase, sigma 54 subunit, RpoN/SigL. (438 aa)
	nusB	NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (133 aa)
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (69 aa)
	nusA	Transcription elongation factor; Participates in both transcription termination and antitermination. (362 aa)
	pyrR	Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes. Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. (177 aa)
	sigA	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (379 aa)
	PEPE_1161	RNA binding protein, RRM domain. (71 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1212 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
	nusG	Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (181 aa)
	PEPE_1497	RNA polymerase, sigma 30 subunit, SigH. (197 aa)
	rho	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (428 aa)

Your Current Organism:

Pediococcus pentosaceus

NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEPE_0114	rpoA	PEPE_0114	PEPE_1392	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
PEPE_0114	rpoB	PEPE_0114	PEPE_1426	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
PEPE_0114	rpoC	PEPE_0114	PEPE_1425	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.718
PEPE_0114	rpoZ	PEPE_0114	PEPE_0826	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.627
PEPE_0457	rho	PEPE_0457	PEPE_1569	RNA polymerase, sigma 54 subunit, RpoN/SigL.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.486
PEPE_0457	rpoA	PEPE_0457	PEPE_1392	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.937
PEPE_0457	rpoB	PEPE_0457	PEPE_1426	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.918
PEPE_0457	rpoC	PEPE_0457	PEPE_1425	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.917
PEPE_0457	rpoZ	PEPE_0457	PEPE_0826	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.873
PEPE_1161	rpoA	PEPE_1161	PEPE_1392	RNA binding protein, RRM domain.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
PEPE_1161	rpoB	PEPE_1161	PEPE_1426	RNA binding protein, RRM domain.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
PEPE_1161	rpoC	PEPE_1161	PEPE_1425	RNA binding protein, RRM domain.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
PEPE_1161	rpoE	PEPE_1161	PEPE_1572	RNA binding protein, RRM domain.	DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.	0.770
PEPE_1161	rpoZ	PEPE_1161	PEPE_0826	RNA binding protein, RRM domain.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.617
PEPE_1161	sigA	PEPE_1161	PEPE_1099	RNA binding protein, RRM domain.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.562
PEPE_1497	nusG	PEPE_1497	PEPE_1494	RNA polymerase, sigma 30 subunit, SigH.	Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.	0.534
PEPE_1497	rpoA	PEPE_1497	PEPE_1392	RNA polymerase, sigma 30 subunit, SigH.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
PEPE_1497	rpoB	PEPE_1497	PEPE_1426	RNA polymerase, sigma 30 subunit, SigH.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
PEPE_1497	rpoC	PEPE_1497	PEPE_1425	RNA polymerase, sigma 30 subunit, SigH.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.718
PEPE_1497	rpoZ	PEPE_1497	PEPE_0826	RNA polymerase, sigma 30 subunit, SigH.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.727

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