27 items (Pediococcus pentosaceus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Your Input:
	PEPE_0398	ABC-type dipeptide/oligopeptide/nickel transport system, permease component. (341 aa)
	PEPE_0385	Guanylate kinase. (193 aa)
	rnmV	RNAse M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (186 aa)
	PEPE_0114	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. (193 aa)
	rnj	Predicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (585 aa)
	PEPE_1105	Diacylglycerol kinase. (129 aa)
	dnaG	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (620 aa)
	rpoE	DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (178 aa)
	gmk	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (204 aa)
	nadE	NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (272 aa)
	PEPE_1497	RNA polymerase, sigma 30 subunit, SigH. (197 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1212 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)
	PEPE_1289	DNA replication and repair protein RadC; Belongs to the UPF0758 family. (219 aa)
	PEPE_1241	Hypothetical protein of possible phage origin. (132 aa)
	rnj-2	RNase J1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)
	PEPE_1161	RNA binding protein, RRM domain. (71 aa)
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (69 aa)
	PEPE_0990	Hypothetical protein. (1062 aa)
	PEPE_0991	Hypothetical protein. (796 aa)
	PEPE_1094	DNA polymerase III catalytic subunit, DnaE type. (1107 aa)
	sigA	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (379 aa)
	PEPE_0752	Phage anti-repressor protein. (241 aa)
	PEPE_0533	Hypothetical protein. (833 aa)
	PEPE_0523	Transposase. (83 aa)
	PEPE_0457	RNA polymerase, sigma 54 subunit, RpoN/SigL. (438 aa)

Your Current Organism:

Pediococcus pentosaceus

NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEPE_0114	dnaG	PEPE_0114	PEPE_1100	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.461
PEPE_0114	rpoA	PEPE_0114	PEPE_1392	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
PEPE_0114	rpoB	PEPE_0114	PEPE_1426	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
PEPE_0114	rpoC	PEPE_0114	PEPE_1425	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.718
PEPE_0114	rpoZ	PEPE_0114	PEPE_0826	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.627
PEPE_0385	gmk	PEPE_0385	PEPE_0825	Guanylate kinase.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.922
PEPE_0385	rpoZ	PEPE_0385	PEPE_0826	Guanylate kinase.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.716
PEPE_0457	rpoA	PEPE_0457	PEPE_1392	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.937
PEPE_0457	rpoB	PEPE_0457	PEPE_1426	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.918
PEPE_0457	rpoC	PEPE_0457	PEPE_1425	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.917
PEPE_0457	rpoZ	PEPE_0457	PEPE_0826	RNA polymerase, sigma 54 subunit, RpoN/SigL.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.873
PEPE_0990	PEPE_0991	PEPE_0990	PEPE_0991	Hypothetical protein.	Hypothetical protein.	0.785
PEPE_0991	PEPE_0990	PEPE_0991	PEPE_0990	Hypothetical protein.	Hypothetical protein.	0.785
PEPE_1094	dnaG	PEPE_1094	PEPE_1100	DNA polymerase III catalytic subunit, DnaE type.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.830
PEPE_1094	rpoA	PEPE_1094	PEPE_1392	DNA polymerase III catalytic subunit, DnaE type.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.501
PEPE_1094	rpoB	PEPE_1094	PEPE_1426	DNA polymerase III catalytic subunit, DnaE type.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.590
PEPE_1094	rpoC	PEPE_1094	PEPE_1425	DNA polymerase III catalytic subunit, DnaE type.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
PEPE_1094	sigA	PEPE_1094	PEPE_1099	DNA polymerase III catalytic subunit, DnaE type.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.449
PEPE_1161	rnj-2	PEPE_1161	PEPE_1162	RNA binding protein, RRM domain.	RNase J1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.	0.885
PEPE_1161	rpoA	PEPE_1161	PEPE_1392	RNA binding protein, RRM domain.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635

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