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PEPE_0398 PEPE_0398 PEPE_0385 PEPE_0385 rnmV rnmV PEPE_0114 PEPE_0114 rnj rnj PEPE_1105 PEPE_1105 dnaG dnaG rpoE rpoE gmk gmk nadE nadE PEPE_1497 PEPE_1497 rpoB rpoB rpoC rpoC rpoA rpoA PEPE_1289 PEPE_1289 PEPE_1241 PEPE_1241 rnj-2 rnj-2 PEPE_1161 PEPE_1161 rpoZ rpoZ PEPE_0990 PEPE_0990 PEPE_0991 PEPE_0991 PEPE_1094 PEPE_1094 sigA sigA PEPE_0752 PEPE_0752 PEPE_0533 PEPE_0533 PEPE_0523 PEPE_0523 PEPE_0457 PEPE_0457
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PEPE_0398ABC-type dipeptide/oligopeptide/nickel transport system, permease component. (341 aa)
PEPE_0385Guanylate kinase. (193 aa)
rnmVRNAse M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (186 aa)
PEPE_0114RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. (193 aa)
rnjPredicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (585 aa)
PEPE_1105Diacylglycerol kinase. (129 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (620 aa)
rpoEDNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (178 aa)
gmkGuanylate kinase; Essential for recycling GMP and indirectly, cGMP. (204 aa)
nadENH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (272 aa)
PEPE_1497RNA polymerase, sigma 30 subunit, SigH. (197 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1212 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)
PEPE_1289DNA replication and repair protein RadC; Belongs to the UPF0758 family. (219 aa)
PEPE_1241Hypothetical protein of possible phage origin. (132 aa)
rnj-2RNase J1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)
PEPE_1161RNA binding protein, RRM domain. (71 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (69 aa)
PEPE_0990Hypothetical protein. (1062 aa)
PEPE_0991Hypothetical protein. (796 aa)
PEPE_1094DNA polymerase III catalytic subunit, DnaE type. (1107 aa)
sigARNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (379 aa)
PEPE_0752Phage anti-repressor protein. (241 aa)
PEPE_0533Hypothetical protein. (833 aa)
PEPE_0523Transposase. (83 aa)
PEPE_0457RNA polymerase, sigma 54 subunit, RpoN/SigL. (438 aa)
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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