(9 nodes) Organelle inner membrane network (Pediococcus pentosaceus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEPE_1816	N-acetylglucosamine PTS system EIICBA or EIICB component; TC 4.A.1.1.2; TC 4.A.1.1.2; TC 4.A.1.1.2. (659 aa)
	PEPE_0518	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12. (651 aa)
	PEPE_0650	Deoxynucleoside kinase. (219 aa)
	PEPE_1042	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1. (659 aa)
	PEPE_1804	Beta-glucoside PTS system EIICBA component; TC 4.A.1; TC 4.A.1; TC 4.A.1. (657 aa)
	PEPE_0253	NADPH:quinone reductase related Zn-dependent oxidoreductase. (311 aa)
	PEPE_0079	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1. (483 aa)
	PEPE_0077	PTS system IIA component, Glc family; TC 4.A.1. (163 aa)
	PEPE_1437	Deoxynucleoside kinase. (210 aa)

Your Current Organism:

Pediococcus pentosaceus

NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PEPE_0077	PEPE_0079	PTS system IIA component, Glc family; TC 4.A.1.	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	0.995
PEPE_0077	PEPE_0518	PTS system IIA component, Glc family; TC 4.A.1.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	0.718
PEPE_0077	PEPE_1042	PTS system IIA component, Glc family; TC 4.A.1.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.712
PEPE_0077	PEPE_1804	PTS system IIA component, Glc family; TC 4.A.1.	Beta-glucoside PTS system EIICBA component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.705
PEPE_0077	PEPE_1816	PTS system IIA component, Glc family; TC 4.A.1.	N-acetylglucosamine PTS system EIICBA or EIICB component; TC 4.A.1.1.2; TC 4.A.1.1.2; TC 4.A.1.1.2.	0.724
PEPE_0079	PEPE_0077	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	PTS system IIA component, Glc family; TC 4.A.1.	0.995
PEPE_0079	PEPE_0518	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	0.879
PEPE_0079	PEPE_1042	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.879
PEPE_0079	PEPE_1804	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	Beta-glucoside PTS system EIICBA component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.986
PEPE_0079	PEPE_1816	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	N-acetylglucosamine PTS system EIICBA or EIICB component; TC 4.A.1.1.2; TC 4.A.1.1.2; TC 4.A.1.1.2.	0.898
PEPE_0518	PEPE_0077	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	PTS system IIA component, Glc family; TC 4.A.1.	0.718
PEPE_0518	PEPE_0079	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	0.879
PEPE_0518	PEPE_1042	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.998
PEPE_0518	PEPE_1804	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	Beta-glucoside PTS system EIICBA component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.990
PEPE_0518	PEPE_1816	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	N-acetylglucosamine PTS system EIICBA or EIICB component; TC 4.A.1.1.2; TC 4.A.1.1.2; TC 4.A.1.1.2.	0.989
PEPE_1042	PEPE_0077	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	PTS system IIA component, Glc family; TC 4.A.1.	0.712
PEPE_1042	PEPE_0079	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	PTS system IIB component, Glc family / PTS system IIC component, Glc family; TC 4.A.1; TC 4.A.1.	0.879
PEPE_1042	PEPE_0518	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12; TC 4.A.1.2.12.	0.998
PEPE_1042	PEPE_1804	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	Beta-glucoside PTS system EIICBA component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	0.990
PEPE_1042	PEPE_1816	Sucrose PTS system EIIBCA or EIIBC component; TC 4.A.1; TC 4.A.1; TC 4.A.1.	N-acetylglucosamine PTS system EIICBA or EIICB component; TC 4.A.1.1.2; TC 4.A.1.1.2; TC 4.A.1.1.2.	0.989

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