STRINGSTRING
PEPE_0397 PEPE_0397 PEPE_0021 PEPE_0021 secA2 secA2 PEPE_0063 PEPE_0063 PEPE_0102 PEPE_0102 PEPE_0129 PEPE_0129 PEPE_0162 PEPE_0162 PEPE_0182 PEPE_0182 PEPE_0213 PEPE_0213 PEPE_0275 PEPE_0275 PEPE_0288 PEPE_0288 PEPE_0339 PEPE_0339 PEPE_0366 PEPE_0366 PEPE_0373 PEPE_0373 PEPE_1567 PEPE_1567 PEPE_1595 PEPE_1595 PEPE_1635 PEPE_1635 PEPE_1644 PEPE_1644 PEPE_1658 PEPE_1658 PEPE_1688 PEPE_1688 PEPE_1731 PEPE_1731 PEPE_1771 PEPE_1771 PEPE_1791 PEPE_1791 PEPE_1802 PEPE_1802 PEPE_1820 PEPE_1820 PEPE_0398 PEPE_0398 PEPE_0416 PEPE_0416 secA1 secA1 PEPE_0433 PEPE_0433 PEPE_0445 PEPE_0445 PEPE_0463 PEPE_0463 PEPE_0503 PEPE_0503 PEPE_0642 PEPE_0642 rpoZ rpoZ PEPE_0919 PEPE_0919 msrA msrA PEPE_1051 PEPE_1051 PEPE_1055 PEPE_1055 PEPE_1258 PEPE_1258 PEPE_1292 PEPE_1292 PEPE_1336 PEPE_1336 PEPE_1337 PEPE_1337 rpoA rpoA secY secY rpoC rpoC rpoB rpoB PEPE_1495 PEPE_1495 PEPE_1509 PEPE_1509
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PEPE_0397ABC-type dipeptide/oligopeptide/nickel transport system, permease component. (309 aa)
PEPE_0021Acetyltransferase. (394 aa)
secA2Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (789 aa)
PEPE_0063Protein translocase subunit secY/sec61 alpha; Belongs to the SecY/SEC61-alpha family. (410 aa)
PEPE_0102Thiol-disulfide isomerase and thioredoxin. (106 aa)
PEPE_0129Permease of the major facilitator superfamily. (478 aa)
PEPE_0162D-xylose proton-symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (456 aa)
PEPE_0182Zn-dependent alcohol dehydrogenase. (373 aa)
PEPE_0213Permease of the major facilitator superfamily. (394 aa)
PEPE_0275Permease of the major facilitator superfamily. (479 aa)
PEPE_0288Acetyltransferase. (390 aa)
PEPE_0339Permease of the major facilitator superfamily. (473 aa)
PEPE_0366Thioredoxin reductase. (328 aa)
PEPE_0373Thiol-disulfide isomerase and thioredoxin; Belongs to the thioredoxin family. (109 aa)
PEPE_1567Permease of the major facilitator superfamily. (409 aa)
PEPE_1595Permease of the major facilitator superfamily. (492 aa)
PEPE_1635Permease of the major facilitator superfamily. (391 aa)
PEPE_1644Nucleoside diphosphate kinase; Belongs to the NDK family. (145 aa)
PEPE_1658ABC-type multidrug transport system, ATPase and permease component. (592 aa)
PEPE_1688Permease of the major facilitator superfamily. (391 aa)
PEPE_1731Permease of the major facilitator superfamily. (405 aa)
PEPE_1771Pyruvate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component. (429 aa)
PEPE_1791Permease of the major facilitator superfamily. (480 aa)
PEPE_1802Permease of the major facilitator superfamily. (440 aa)
PEPE_18205-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (353 aa)
PEPE_0398ABC-type dipeptide/oligopeptide/nickel transport system, permease component. (341 aa)
PEPE_0416Permease of the major facilitator superfamily. (466 aa)
secA1Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (786 aa)
PEPE_0433Phosphate ABC transporter substrate-binding protein, PhoT family; TC 3.A.1.7.1. (293 aa)
PEPE_0445Thioredoxin reductase. (308 aa)
PEPE_0463Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (78 aa)
PEPE_0503Permease of the major facilitator superfamily. (457 aa)
PEPE_0642Permease of the major facilitator superfamily. (488 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (69 aa)
PEPE_0919Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase related flavin-dependent oxidoreductase. (351 aa)
msrAPeptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (171 aa)
PEPE_1051Nucleoside diphosphate kinase; Belongs to the NDK family. (141 aa)
PEPE_1055D-xylose proton-symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (460 aa)
PEPE_1258Thiol-disulfide isomerase and thioredoxin; Belongs to the thioredoxin family. (103 aa)
PEPE_1292Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (163 aa)
PEPE_1336ABC-type multidrug transport system, ATPase and permease component. (626 aa)
PEPE_1337ABC-type multidrug transport system, ATPase and permease component. (579 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)
secYProtein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (432 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1212 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
PEPE_1495Protein translocase subunit secE/sec61 gamma; Belongs to the SecE/SEC61-gamma family. (52 aa)
PEPE_1509Arabinose efflux permease. (395 aa)
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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