(25 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_204971	40S ribosomal protein S27. (73 aa)
	KGM_210643	Ribosomal protein L4. (417 aa)
	KGM_209700	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (121 aa)
	KGM_213173	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	KGM_204848	Ribosomal protein L14. (166 aa)
	KGM_211910	Ribosomal protein L21. (159 aa)
	KGM_211671	Ribosomal protein S21. (112 aa)
	KGM_212286	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (130 aa)
	KGM_216087	Ribosomal protein L30. (113 aa)
	KGM_205446	Ribosomal protein L28. (139 aa)
	KGM_210524	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	KGM_202260	Ribosomal protein S29. (56 aa)
	KGM_214523	Ribosomal protein L26. (148 aa)
	KGM_208035	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (253 aa)
	KGM_208785	Ribosomal protein 5; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	KGM_206595	Ribosomal protein S19. (153 aa)
	KGM_208069	Ribosomal protein L8. (257 aa)
	KGM_200593	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	KGM_202160	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)
	KGM_211872	Ribosomal protein 1. (158 aa)
	KGM_205356	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (309 aa)
	KGM_202253	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (119 aa)
	KGM_207114	Ribosomal protein L6. (272 aa)
	KGM_212928	Ribosomal protein L18. (189 aa)
	KGM_214364	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (164 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_200593	KGM_202160	A0A212FD11	A0A212FEQ6	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998
KGM_200593	KGM_202253	A0A212FD11	A0A212FKX5	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
KGM_200593	KGM_202260	A0A212FD11	A0A212F6L3	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S29.	0.999
KGM_200593	KGM_204848	A0A212FD11	A0A212EVD6	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L14.	0.999
KGM_200593	KGM_204971	A0A212FD11	A0A212EJF1	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S27.	0.999
KGM_200593	KGM_205356	A0A212FD11	A0A212FIS8	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
KGM_200593	KGM_205446	A0A212FD11	A0A212EZW4	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L28.	0.999
KGM_200593	KGM_206595	A0A212FD11	A0A212F9G1	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S19.	0.999
KGM_200593	KGM_207114	A0A212FD11	A0A212FN03	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L6.	0.999
KGM_200593	KGM_208035	A0A212FD11	A0A212F888	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
KGM_200593	KGM_208069	A0A212FD11	A0A212FAM8	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L8.	0.999
KGM_200593	KGM_208785	A0A212FD11	A0A212F8S5	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein 5; Belongs to the universal ribosomal protein uS12 family.	0.999
KGM_200593	KGM_209700	A0A212FD11	A0A212ERF9	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
KGM_200593	KGM_210524	A0A212FD11	A0A212F2I5	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
KGM_200593	KGM_210643	A0A212FD11	A0A212EPB6	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L4.	0.999
KGM_200593	KGM_211671	A0A212FD11	A0A212EX61	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S21.	0.999
KGM_200593	KGM_211872	A0A212FD11	A0A212FI05	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein 1.	0.999
KGM_200593	KGM_211910	A0A212FD11	A0A212EX51	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L21.	0.999
KGM_200593	KGM_212286	A0A212FD11	A0A212EX77	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
KGM_200593	KGM_212928	A0A212FD11	A0A212FP40	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L18.	0.999