(10 nodes) Nuclear cyclin-dependent protein kinase holoenzyme complex, and Super elongation complex network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_211769	Putative cyclin; Belongs to the cyclin family. (251 aa)
	KGM_213856	Cyclin-T; Belongs to the cyclin family. (818 aa)
	KGM_213316	AF4/FMR2 family member 3. (827 aa)
	KGM_203122	RNA polymerase 2 elongation factor ELL2 like protein. (737 aa)
	KGM_208054	ENL like protein. (278 aa)
	KGM_211027	Transcription elongation factor B polypeptide 3 like protein. (803 aa)
	KGM_214460	Cyclin dependent kinase 9. (350 aa)
	KGM_200830	Cyclin dependent kinase 12 transcript variant A. (1062 aa)
	KGM_212611	EAF domain-containing protein. (301 aa)
	KGM_209949	Cyclin-K like protein; Belongs to the cyclin family. (382 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_200830	KGM_203122	A0A212FEE2	A0A212F2C2	Cyclin dependent kinase 12 transcript variant A.	RNA polymerase 2 elongation factor ELL2 like protein.	0.650
KGM_200830	KGM_209949	A0A212FEE2	A0A212FHT3	Cyclin dependent kinase 12 transcript variant A.	Cyclin-K like protein; Belongs to the cyclin family.	0.997
KGM_200830	KGM_211027	A0A212FEE2	A0A212F7B5	Cyclin dependent kinase 12 transcript variant A.	Transcription elongation factor B polypeptide 3 like protein.	0.653
KGM_200830	KGM_211769	A0A212FEE2	A0A212EIF2	Cyclin dependent kinase 12 transcript variant A.	Putative cyclin; Belongs to the cyclin family.	0.942
KGM_200830	KGM_213856	A0A212FEE2	A0A212EL86	Cyclin dependent kinase 12 transcript variant A.	Cyclin-T; Belongs to the cyclin family.	0.968
KGM_200830	KGM_214460	A0A212FEE2	A0A212FBZ0	Cyclin dependent kinase 12 transcript variant A.	Cyclin dependent kinase 9.	0.727
KGM_203122	KGM_200830	A0A212F2C2	A0A212FEE2	RNA polymerase 2 elongation factor ELL2 like protein.	Cyclin dependent kinase 12 transcript variant A.	0.650
KGM_203122	KGM_208054	A0A212F2C2	A0A212F5Y0	RNA polymerase 2 elongation factor ELL2 like protein.	ENL like protein.	0.866
KGM_203122	KGM_209949	A0A212F2C2	A0A212FHT3	RNA polymerase 2 elongation factor ELL2 like protein.	Cyclin-K like protein; Belongs to the cyclin family.	0.754
KGM_203122	KGM_211027	A0A212F2C2	A0A212F7B5	RNA polymerase 2 elongation factor ELL2 like protein.	Transcription elongation factor B polypeptide 3 like protein.	0.857
KGM_203122	KGM_211769	A0A212F2C2	A0A212EIF2	RNA polymerase 2 elongation factor ELL2 like protein.	Putative cyclin; Belongs to the cyclin family.	0.651
KGM_203122	KGM_212611	A0A212F2C2	A0A212FFA8	RNA polymerase 2 elongation factor ELL2 like protein.	EAF domain-containing protein.	0.981
KGM_203122	KGM_213316	A0A212F2C2	A0A212EM97	RNA polymerase 2 elongation factor ELL2 like protein.	AF4/FMR2 family member 3.	0.970
KGM_203122	KGM_213856	A0A212F2C2	A0A212EL86	RNA polymerase 2 elongation factor ELL2 like protein.	Cyclin-T; Belongs to the cyclin family.	0.891
KGM_203122	KGM_214460	A0A212F2C2	A0A212FBZ0	RNA polymerase 2 elongation factor ELL2 like protein.	Cyclin dependent kinase 9.	0.918
KGM_208054	KGM_203122	A0A212F5Y0	A0A212F2C2	ENL like protein.	RNA polymerase 2 elongation factor ELL2 like protein.	0.866
KGM_208054	KGM_209949	A0A212F5Y0	A0A212FHT3	ENL like protein.	Cyclin-K like protein; Belongs to the cyclin family.	0.597
KGM_208054	KGM_212611	A0A212F5Y0	A0A212FFA8	ENL like protein.	EAF domain-containing protein.	0.817
KGM_208054	KGM_213316	A0A212F5Y0	A0A212EM97	ENL like protein.	AF4/FMR2 family member 3.	0.819
KGM_208054	KGM_213856	A0A212F5Y0	A0A212EL86	ENL like protein.	Cyclin-T; Belongs to the cyclin family.	0.678