(32 nodes) Amino sugar and nucleotide sugar metabolism, and Glycogen synthesis network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_202718	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (349 aa)
	KGM_208173	Mannose-1-phosphate guanyltransferase beta. (100 aa)
	KGM_215935	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (361 aa)
	KGM_208172	Mannose-1-phosphate guanyltransferase beta like protein. (369 aa)
	KGM_213320	Glycosyl transferase. (138 aa)
	KGM_215494	Putative 1,4-alpha-glucan branching enzyme. (678 aa)
	KGM_204242	Glucosamine-fructose-6-phosphate aminotransferase. (674 aa)
	KGM_213456	NTP_transferase domain-containing protein. (515 aa)
	KGM_215219	UTP--glucose-1-phosphate uridylyltransferase. (512 aa)
	KGM_201541	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (1132 aa)
	KGM_201438	Glycogenin-1. (1301 aa)
	KGM_203073	Dtdp-glucose 4-6-dehydratase. (378 aa)
	KGM_214402	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (753 aa)
	KGM_206775	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family. (526 aa)
	KGM_204639	Glucosamine-6-phosphate isomerase. (278 aa)
	KGM_215011	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (479 aa)
	KGM_211261	UDP-N-acetylglucosamine pyrophosphorylase. (442 aa)
	KGM_213711	GDP-mannose 4,6 dehydratase like protein. (244 aa)
	KGM_205833	Glycogen debranching enzyme. (1667 aa)
	KGM_205846	NAD-dependent epimerase/dehydratase. (317 aa)
	KGM_204601B	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family. (339 aa)
	KGM_210989	Mannose-6-phosphate isomerase. (403 aa)
	KGM_215041	Uncharacterized protein. (388 aa)
	KGM_202385	Putative nad dependent epimerase/dehydratase. (325 aa)
	KGM_215218	UDP-glucose pyrophosphorylase. (437 aa)
	KGM_209159	Phosphotransferase. (496 aa)
	KGM_209359	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions. (192 aa)
	KGM_202722	GDP-mannose 4,6 dehydratase. (286 aa)
	KGM_204203	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily. (193 aa)
	KGM_209508	Phosphoglucomutase; Belongs to the phosphohexose mutase family. (433 aa)
	KGM_213269	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family. (397 aa)
	KGM_205386	Phosphoglucomutase. (121 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_201438	KGM_202385	A0A212ES35	A0A212F867	Glycogenin-1.	Putative nad dependent epimerase/dehydratase.	0.444
KGM_201438	KGM_203073	A0A212ES35	A0A212EUI2	Glycogenin-1.	Dtdp-glucose 4-6-dehydratase.	0.444
KGM_201438	KGM_205386	A0A212ES35	A0A212FLV8	Glycogenin-1.	Phosphoglucomutase.	0.427
KGM_201438	KGM_205833	A0A212ES35	A0A212F108	Glycogenin-1.	Glycogen debranching enzyme.	0.910
KGM_201438	KGM_205846	A0A212ES35	A0A212F134	Glycogenin-1.	NAD-dependent epimerase/dehydratase.	0.444
KGM_201438	KGM_209508	A0A212ES35	A0A212FKV0	Glycogenin-1.	Phosphoglucomutase; Belongs to the phosphohexose mutase family.	0.427
KGM_201438	KGM_213320	A0A212ES35	A0A212EIJ6	Glycogenin-1.	Glycosyl transferase.	0.689
KGM_201438	KGM_214402	A0A212ES35	A0A212EVT8	Glycogenin-1.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.999
KGM_201438	KGM_215218	A0A212ES35	A0A212FCK2	Glycogenin-1.	UDP-glucose pyrophosphorylase.	0.937
KGM_201438	KGM_215219	A0A212ES35	A0A212EPR9	Glycogenin-1.	UTP--glucose-1-phosphate uridylyltransferase.	0.937
KGM_201438	KGM_215494	A0A212ES35	A0A212EJI8	Glycogenin-1.	Putative 1,4-alpha-glucan branching enzyme.	0.995
KGM_201541	KGM_202718	A0A212ERH4	A0A212EHH2	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.981
KGM_201541	KGM_204601B	A0A212ERH4	A0A212F2K1	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.995
KGM_201541	KGM_205386	A0A212ERH4	A0A212FLV8	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Phosphoglucomutase.	0.548
KGM_201541	KGM_206775	A0A212ERH4	A0A212EW76	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.465
KGM_201541	KGM_209159	A0A212ERH4	A0A212FE88	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Phosphotransferase.	0.500
KGM_201541	KGM_209508	A0A212ERH4	A0A212FKV0	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Phosphoglucomutase; Belongs to the phosphohexose mutase family.	0.548
KGM_201541	KGM_210989	A0A212ERH4	A0A212F4K2	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	Mannose-6-phosphate isomerase.	0.567
KGM_201541	KGM_211261	A0A212ERH4	A0A212F0J1	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	UDP-N-acetylglucosamine pyrophosphorylase.	0.764
KGM_201541	KGM_213269	A0A212ERH4	A0A212FLN5	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.	0.465