(5 nodes) Glycine rich protein, and Tensin/EPS8 phosphotyrosine-binding domain network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_215834	Uncharacterized protein. (1138 aa)
	KGM_205056	Integrin beta-PS. (122 aa)
	KGM_205518B	Leukocyte receptor tyrosine protein kinase. (1526 aa)
	KGM_205518A	Leukocyte receptor tyrosine protein kinase. (957 aa)
	KGM_203215	Uncharacterized protein. (105 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_203215	KGM_205518A	A0A212FJK3	A0A212FJE7	Uncharacterized protein.	Leukocyte receptor tyrosine protein kinase.	0.616
KGM_203215	KGM_205518B	A0A212FJK3	A0A212F8R6	Uncharacterized protein.	Leukocyte receptor tyrosine protein kinase.	0.616
KGM_205056	KGM_215834	A0A212F640	A0A212ET20	Integrin beta-PS.	Uncharacterized protein.	0.945
KGM_205518A	KGM_203215	A0A212FJE7	A0A212FJK3	Leukocyte receptor tyrosine protein kinase.	Uncharacterized protein.	0.616
KGM_205518A	KGM_215834	A0A212FJE7	A0A212ET20	Leukocyte receptor tyrosine protein kinase.	Uncharacterized protein.	0.958
KGM_205518B	KGM_203215	A0A212F8R6	A0A212FJK3	Leukocyte receptor tyrosine protein kinase.	Uncharacterized protein.	0.616
KGM_205518B	KGM_215834	A0A212F8R6	A0A212ET20	Leukocyte receptor tyrosine protein kinase.	Uncharacterized protein.	0.958
KGM_215834	KGM_205056	A0A212ET20	A0A212F640	Uncharacterized protein.	Integrin beta-PS.	0.945
KGM_215834	KGM_205518A	A0A212ET20	A0A212FJE7	Uncharacterized protein.	Leukocyte receptor tyrosine protein kinase.	0.958
KGM_215834	KGM_205518B	A0A212ET20	A0A212F8R6	Uncharacterized protein.	Leukocyte receptor tyrosine protein kinase.	0.958