(39 nodes) Endoplasmic reticulum organization network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_206149	Putative VAMP-associated protein. (275 aa)
	KGM_212858	Atlastin-2. (521 aa)
	KGM_210570	Lunapark-B like protein. (351 aa)
	KGM_215950	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (246 aa)
	KGM_215495	Tryptophan-rich protein. (169 aa)
	KGM_212102	ADP-ribosylation factor 6 interacting protein. (138 aa)
	KGM_200185	Uncharacterized protein. (245 aa)
	KGM_202082	Vesicular mannose-binding lectin protein. (328 aa)
	KGM_211848	Uncharacterized protein. (195 aa)
	KGM_211112	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (172 aa)
	KGM_210014B	Pecanex protein 1. (183 aa)
	KGM_210014A	Pecanex protein 1. (2462 aa)
	KGM_213588	Transmembrane protein 170A. (99 aa)
	KGM_204224	Putative synaptotagmin. (1014 aa)
	KGM_216127	Cytoskeleton-associated protein 5. (2010 aa)
	KGM_200386	Putative Sec24B protein. (134 aa)
	KGM_200715	Putative Dolichyl-phosphate beta-glucosyltransferase. (334 aa)
	KGM_213026	Uncharacterized protein. (75 aa)
	KGM_215955	ADP-ribosylation factor protein 1; Belongs to the small GTPase superfamily. Arf family. (164 aa)
	KGM_210091	Ubiquitin-like domain-containing protein. (152 aa)
	KGM_215248	Putative vesicle associated protein. (1185 aa)
	KGM_203768	Putative Sec24B protein. (731 aa)
	KGM_210722	EMC1_C domain-containing protein. (886 aa)
	KGM_208934	GTP-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	KGM_202885	Putative secreted salivary protein. (225 aa)
	KGM_203732	Uncharacterized protein. (216 aa)
	KGM_215295	Protein transport protein sec16. (2349 aa)
	KGM_214668	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...] (335 aa)
	KGM_215070	Uncharacterized protein. (317 aa)
	KGM_214371	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (805 aa)
	KGM_200546	Putative Rho-associated protein kinase. (632 aa)
	KGM_214955	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (711 aa)
	KGM_209031	Jagunal. (194 aa)
	KGM_201735	Ergic53 isoform A. (506 aa)
	KGM_209568	Uncharacterized protein. (226 aa)
	KGM_216155B	snRNA-activating protein complex subunit 1. (377 aa)
	KGM_207406	Kr-h2. (257 aa)
	KGM_212927	Putative rap55. (473 aa)
	KGM_212821	Atlastin. (472 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_200386	KGM_201735	A0A212EQ71	A0A212FE18	Putative Sec24B protein.	Ergic53 isoform A.	0.734
KGM_200386	KGM_202082	A0A212EQ71	A0A212EM81	Putative Sec24B protein.	Vesicular mannose-binding lectin protein.	0.634
KGM_200386	KGM_208934	A0A212EQ71	A0A212F1F4	Putative Sec24B protein.	GTP-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family.	0.802
KGM_200386	KGM_214955	A0A212EQ71	A0A212FCI2	Putative Sec24B protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.953
KGM_200386	KGM_215248	A0A212EQ71	A0A212F016	Putative Sec24B protein.	Putative vesicle associated protein.	0.885
KGM_200386	KGM_215295	A0A212EQ71	A0A212F5I4	Putative Sec24B protein.	Protein transport protein sec16.	0.968
KGM_200386	KGM_215950	A0A212EQ71	A0A212EIL1	Putative Sec24B protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.953
KGM_201735	KGM_200386	A0A212FE18	A0A212EQ71	Ergic53 isoform A.	Putative Sec24B protein.	0.734
KGM_201735	KGM_202082	A0A212FE18	A0A212EM81	Ergic53 isoform A.	Vesicular mannose-binding lectin protein.	0.714
KGM_201735	KGM_203768	A0A212FE18	A0A212F0L3	Ergic53 isoform A.	Putative Sec24B protein.	0.734
KGM_201735	KGM_206149	A0A212FE18	A0A212EGN0	Ergic53 isoform A.	Putative VAMP-associated protein.	0.623
KGM_201735	KGM_208934	A0A212FE18	A0A212F1F4	Ergic53 isoform A.	GTP-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family.	0.819
KGM_201735	KGM_214955	A0A212FE18	A0A212FCI2	Ergic53 isoform A.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.795
KGM_201735	KGM_215248	A0A212FE18	A0A212F016	Ergic53 isoform A.	Putative vesicle associated protein.	0.833
KGM_201735	KGM_215295	A0A212FE18	A0A212F5I4	Ergic53 isoform A.	Protein transport protein sec16.	0.816
KGM_201735	KGM_215950	A0A212FE18	A0A212EIL1	Ergic53 isoform A.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.795
KGM_202082	KGM_200386	A0A212EM81	A0A212EQ71	Vesicular mannose-binding lectin protein.	Putative Sec24B protein.	0.634
KGM_202082	KGM_201735	A0A212EM81	A0A212FE18	Vesicular mannose-binding lectin protein.	Ergic53 isoform A.	0.714
KGM_202082	KGM_203768	A0A212EM81	A0A212F0L3	Vesicular mannose-binding lectin protein.	Putative Sec24B protein.	0.634
KGM_202082	KGM_208934	A0A212EM81	A0A212F1F4	Vesicular mannose-binding lectin protein.	GTP-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family.	0.698