(17 nodes) Apoptotic cell clearance network (Danaus plexippus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGM_200409	Integrin beta; Belongs to the integrin beta chain family. (800 aa)
	KGM_215770	Tyrosine-protein kinase. (775 aa)
	KGM_200454	Sorting nexin; Involved in several stages of intracellular trafficking. (447 aa)
	KGM_204555	XK-related protein. (849 aa)
	KGM_214204	Rab-protein 14. (213 aa)
	KGM_213169	Mitogen-activated protein kinase. (449 aa)
	KGM_215738	TNFSF13 protein; Belongs to the tumor necrosis factor family. (461 aa)
	KGM_204554	XK-related protein. (297 aa)
	KGM_200455	Vps5 domain-containing protein. (172 aa)
	KGM_214254	XK-related protein. (597 aa)
	KGM_203643A	Ced-6 protein. (498 aa)
	KGM_208786	Mkk7. (682 aa)
	KGM_210262	Rho-related BTB domain-containing protein 2. (716 aa)
	KGM_208973	Multiple epidermal growth factor domains 10. (1028 aa)
	KGM_213875	Mitogen-activated protein kinase kinase kinase 4. (1406 aa)
	KGM_207517	XK-related protein. (1107 aa)
	KGM_203103	Epithelial membrane protein; Belongs to the CD36 family. (454 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_200409	KGM_208973	A0A212FDP2	A0A212FDY0	Integrin beta; Belongs to the integrin beta chain family.	Multiple epidermal growth factor domains 10.	0.410
KGM_200454	KGM_200455	A0A212EQY3	A0A212F314	Sorting nexin; Involved in several stages of intracellular trafficking.	Vps5 domain-containing protein.	0.900
KGM_200455	KGM_200454	A0A212F314	A0A212EQY3	Vps5 domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.900
KGM_203643A	KGM_208973	A0A212F6H3	A0A212FDY0	Ced-6 protein.	Multiple epidermal growth factor domains 10.	0.726
KGM_203643A	KGM_215770	A0A212F6H3	A0A212ELJ7	Ced-6 protein.	Tyrosine-protein kinase.	0.432
KGM_208786	KGM_213169	A0A212F8P7	A0A212EUW4	Mkk7.	Mitogen-activated protein kinase.	0.997
KGM_208973	KGM_200409	A0A212FDY0	A0A212FDP2	Multiple epidermal growth factor domains 10.	Integrin beta; Belongs to the integrin beta chain family.	0.410
KGM_208973	KGM_203643A	A0A212FDY0	A0A212F6H3	Multiple epidermal growth factor domains 10.	Ced-6 protein.	0.726
KGM_208973	KGM_215770	A0A212FDY0	A0A212ELJ7	Multiple epidermal growth factor domains 10.	Tyrosine-protein kinase.	0.700
KGM_210262	KGM_213169	A0A212FBE1	A0A212EUW4	Rho-related BTB domain-containing protein 2.	Mitogen-activated protein kinase.	0.486
KGM_213169	KGM_208786	A0A212EUW4	A0A212F8P7	Mitogen-activated protein kinase.	Mkk7.	0.997
KGM_213169	KGM_210262	A0A212EUW4	A0A212FBE1	Mitogen-activated protein kinase.	Rho-related BTB domain-containing protein 2.	0.486
KGM_213169	KGM_215738	A0A212EUW4	A0A212EVD9	Mitogen-activated protein kinase.	TNFSF13 protein; Belongs to the tumor necrosis factor family.	0.788
KGM_215738	KGM_213169	A0A212EVD9	A0A212EUW4	TNFSF13 protein; Belongs to the tumor necrosis factor family.	Mitogen-activated protein kinase.	0.788
KGM_215770	KGM_203643A	A0A212ELJ7	A0A212F6H3	Tyrosine-protein kinase.	Ced-6 protein.	0.432
KGM_215770	KGM_208973	A0A212ELJ7	A0A212FDY0	Tyrosine-protein kinase.	Multiple epidermal growth factor domains 10.	0.700