(36 nodes) Nucleotide excision repair network (Danaus plexippus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	KGM_212040	General transcription factor IIH subunit 1. (561 aa)
	KGM_212911	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (525 aa)
	KGM_215697	Cullin-4B; Belongs to the cullin family. (1092 aa)
	KGM_211860	Ring box protein. (139 aa)
	KGM_202177	Replication factor C subunit 1. (1002 aa)
	KGM_200346	Putative DNA excision repair protein ERCC-6. (734 aa)
	KGM_202526	Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (338 aa)
	KGM_205849	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	KGM_213019	DNA polymerase. (972 aa)
	KGM_204627	Replication factor C subunit 2. (349 aa)
	KGM_210605	DNA repair protein complementing XP-A cell. (204 aa)
	KGM_206420	CDK-activating kinase assembly factor MAT1 isoform 2. (308 aa)
	KGM_213934	Replication factor C4. (350 aa)
	KGM_200974	Tfb5. (73 aa)
	KGM_210520	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
	KGM_208542	ERCC4 domain-containing protein. (877 aa)
	KGM_205529	DNA polymerase epsilon subunit 3. (119 aa)
	KGM_213517	TFIIH basal transcription factor complex helicase XPB subunit. (1063 aa)
	KGM_207474B	Nucleotide excision repair protein. (950 aa)
	KGM_201295	Mutagen-sensitive protein 201. (1103 aa)
	KGM_210109	CBFD_NFYB_HMF domain-containing protein. (149 aa)
	KGM_206093	Nuclear excision repair protein rad23. (323 aa)
	KGM_210606	DNA repair protein complementing XP-A cell. (207 aa)
	KGM_211497	Putative centrin. (317 aa)
	KGM_210952	Putative DNA polymerase subunit delta-3. (406 aa)
	KGM_211258	Replication protein A2. (201 aa)
	KGM_214746	DNA damage-binding protein 1. (1128 aa)
	KGM_215089	Helicase ATP-binding domain-containing protein. (788 aa)
	KGM_206779	Putative transcription factor TFIIH-subunit. (291 aa)
	KGM_207853	Replication protein A3. (128 aa)
	KGM_203534	DNA ligase 1; Belongs to the ATP-dependent DNA ligase family. (842 aa)
	KGM_209232	Replication factor C subunit 3. (355 aa)
	KGM_204841	DNA polymerase delta small subunit. (439 aa)
	KGM_215194	CYCLIN domain-containing protein; Belongs to the cyclin family. (453 aa)
	KGM_214944	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2082 aa)
	KGM_208909	Excision repair cross-complementing 1 ercc1. (269 aa)

Your Current Organism:

Danaus plexippus

NCBI taxonomy Id: 278856
Other names: D. plexippus plexippus, Danaus plexippus plexippus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGM_200346	KGM_200974	A0A212EP84	A0A212F1G1	Putative DNA excision repair protein ERCC-6.	Tfb5.	0.535
KGM_200346	KGM_201295	A0A212EP84	A0A212F6C9	Putative DNA excision repair protein ERCC-6.	Mutagen-sensitive protein 201.	0.975
KGM_200346	KGM_202526	A0A212EP84	A0A212ERP3	Putative DNA excision repair protein ERCC-6.	Cyclin dependent kinase 7; Belongs to the protein kinase superfamily.	0.593
KGM_200346	KGM_203534	A0A212EP84	A0A212FE75	Putative DNA excision repair protein ERCC-6.	DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.	0.408
KGM_200346	KGM_205529	A0A212EP84	A0A212F3Z4	Putative DNA excision repair protein ERCC-6.	DNA polymerase epsilon subunit 3.	0.433
KGM_200346	KGM_205849	A0A212EP84	A0A212ES54	Putative DNA excision repair protein ERCC-6.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.514
KGM_200346	KGM_206093	A0A212EP84	A0A212F6W6	Putative DNA excision repair protein ERCC-6.	Nuclear excision repair protein rad23.	0.614
KGM_200346	KGM_206420	A0A212EP84	A0A212EZP9	Putative DNA excision repair protein ERCC-6.	CDK-activating kinase assembly factor MAT1 isoform 2.	0.655
KGM_200346	KGM_206779	A0A212EP84	A0A212FDF5	Putative DNA excision repair protein ERCC-6.	Putative transcription factor TFIIH-subunit.	0.657
KGM_200346	KGM_207474B	A0A212EP84	A0A212F4G2	Putative DNA excision repair protein ERCC-6.	Nucleotide excision repair protein.	0.617
KGM_200346	KGM_208542	A0A212EP84	A0A212F3J3	Putative DNA excision repair protein ERCC-6.	ERCC4 domain-containing protein.	0.682
KGM_200346	KGM_208909	A0A212EP84	A0A212FPC9	Putative DNA excision repair protein ERCC-6.	Excision repair cross-complementing 1 ercc1.	0.600
KGM_200346	KGM_210520	A0A212EP84	A0A212F2G2	Putative DNA excision repair protein ERCC-6.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.638
KGM_200346	KGM_210605	A0A212EP84	A0A212EW90	Putative DNA excision repair protein ERCC-6.	DNA repair protein complementing XP-A cell.	0.827
KGM_200346	KGM_210606	A0A212EP84	A0A212FAP1	Putative DNA excision repair protein ERCC-6.	DNA repair protein complementing XP-A cell.	0.827
KGM_200346	KGM_211860	A0A212EP84	A0A212EMC7	Putative DNA excision repair protein ERCC-6.	Ring box protein.	0.844
KGM_200346	KGM_212040	A0A212EP84	A0A212EJ66	Putative DNA excision repair protein ERCC-6.	General transcription factor IIH subunit 1.	0.712
KGM_200346	KGM_213517	A0A212EP84	A0A212F3Z8	Putative DNA excision repair protein ERCC-6.	TFIIH basal transcription factor complex helicase XPB subunit.	0.848
KGM_200346	KGM_214746	A0A212EP84	A0A212FBZ7	Putative DNA excision repair protein ERCC-6.	DNA damage-binding protein 1.	0.970
KGM_200346	KGM_215089	A0A212EP84	A0A212FCN4	Putative DNA excision repair protein ERCC-6.	Helicase ATP-binding domain-containing protein.	0.833