(57 nodes) Cellular carbohydrate biosynthetic process network (Acidobacteriaceae bacterium TAA166)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000421065_00242	Unannotated protein. (447 aa)
	GCA_000421065_00707	Unannotated protein. (395 aa)
	GCA_000421065_00722	Unannotated protein. (401 aa)
	GCA_000421065_00751	Unannotated protein. (244 aa)
	GCA_000421065_00752	Unannotated protein. (85 aa)
	GCA_000421065_00847	Unannotated protein. (525 aa)
	GCA_000421065_00854	Unannotated protein. (579 aa)
	GCA_000421065_00945	Unannotated protein. (445 aa)
	GCA_000421065_00947	Unannotated protein. (353 aa)
	GCA_000421065_00965	Unannotated protein. (197 aa)
	GCA_000421065_01004	Unannotated protein. (380 aa)
	GCA_000421065_01010	Unannotated protein. (558 aa)
	GCA_000421065_01012	Unannotated protein. (388 aa)
	GCA_000421065_01105	Unannotated protein. (424 aa)
	GCA_000421065_01124	Unannotated protein. (418 aa)
	GCA_000421065_01129	Unannotated protein. (284 aa)
	GCA_000421065_01272	Unannotated protein. (518 aa)
	GCA_000421065_01590	Unannotated protein. (105 aa)
	GCA_000421065_01997	Unannotated protein. (433 aa)
	GCA_000421065_02213	Unannotated protein. (369 aa)
	GCA_000421065_02275	Unannotated protein. (385 aa)
	GCA_000421065_02293	Unannotated protein. (293 aa)
	GCA_000421065_02545	Unannotated protein. (647 aa)
	GCA_000421065_02655	Unannotated protein. (359 aa)
	GCA_000421065_02749	Unannotated protein. (371 aa)
	GCA_000421065_02754	Unannotated protein. (547 aa)
	GCA_000421065_02760	Unannotated protein. (534 aa)
	GCA_000421065_02870	Unannotated protein. (274 aa)
	GCA_000421065_02877	Unannotated protein. (292 aa)
	GCA_000421065_02938	Unannotated protein. (612 aa)
	GCA_000421065_02954	Unannotated protein. (214 aa)
	GCA_000421065_03028	Unannotated protein. (679 aa)
	GCA_000421065_03029	Unannotated protein. (500 aa)
	GCA_000421065_03078	Unannotated protein. (363 aa)
	GCA_000421065_03234	Unannotated protein. (514 aa)
	GCA_000421065_03284	Unannotated protein. (584 aa)
	GCA_000421065_03500	Unannotated protein. (830 aa)
	GCA_000421065_03559	Unannotated protein. (435 aa)
	GCA_000421065_03607	Unannotated protein. (643 aa)
	GCA_000421065_03608	Unannotated protein. (686 aa)
	GCA_000421065_03615	Unannotated protein. (608 aa)
	GCA_000421065_03812	Unannotated protein. (331 aa)
	GCA_000421065_04048	Unannotated protein. (646 aa)
	GCA_000421065_04240	Unannotated protein. (766 aa)
	GCA_000421065_04289	Unannotated protein. (384 aa)
	GCA_000421065_04448	Unannotated protein. (298 aa)
	GCA_000421065_04541	Unannotated protein. (277 aa)
	GCA_000421065_04542	Unannotated protein. (748 aa)
	GCA_000421065_04592	Unannotated protein. (363 aa)
	GCA_000421065_04619	Unannotated protein. (753 aa)
	GCA_000421065_04628	Unannotated protein. (443 aa)
	GCA_000421065_04630	Unannotated protein. (263 aa)
	GCA_000421065_04680	Unannotated protein. (528 aa)
	GCA_000421065_04682	Unannotated protein. (482 aa)
	GCA_000421065_04721	Unannotated protein. (390 aa)
	GCA_000421065_04772	Unannotated protein. (496 aa)
	GCA_000421065_04946	Unannotated protein. (423 aa)

Your Current Organism:

Acidobacteriaceae bacterium TAA166

NCBI taxonomy Id: 278963
Other names: A. bacterium TAA166, Acidobacteriaceae bacterium TAA 166

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000421065_00707	GCA_000421065_02275	Unannotated protein.	Unannotated protein.	0.525
GCA_000421065_00707	GCA_000421065_02749	Unannotated protein.	Unannotated protein.	0.511
GCA_000421065_00722	GCA_000421065_01004	Unannotated protein.	Unannotated protein.	0.612
GCA_000421065_00722	GCA_000421065_01012	Unannotated protein.	Unannotated protein.	0.676
GCA_000421065_00722	GCA_000421065_02655	Unannotated protein.	Unannotated protein.	0.774
GCA_000421065_00751	GCA_000421065_00752	Unannotated protein.	Unannotated protein.	0.773
GCA_000421065_00752	GCA_000421065_00751	Unannotated protein.	Unannotated protein.	0.773
GCA_000421065_00854	GCA_000421065_00945	Unannotated protein.	Unannotated protein.	0.435
GCA_000421065_00945	GCA_000421065_00854	Unannotated protein.	Unannotated protein.	0.435
GCA_000421065_00945	GCA_000421065_00947	Unannotated protein.	Unannotated protein.	0.960
GCA_000421065_00945	GCA_000421065_00965	Unannotated protein.	Unannotated protein.	0.851
GCA_000421065_00945	GCA_000421065_02213	Unannotated protein.	Unannotated protein.	0.777
GCA_000421065_00945	GCA_000421065_02545	Unannotated protein.	Unannotated protein.	0.642
GCA_000421065_00945	GCA_000421065_02870	Unannotated protein.	Unannotated protein.	0.835
GCA_000421065_00945	GCA_000421065_02954	Unannotated protein.	Unannotated protein.	0.926
GCA_000421065_00945	GCA_000421065_03607	Unannotated protein.	Unannotated protein.	0.567
GCA_000421065_00945	GCA_000421065_03608	Unannotated protein.	Unannotated protein.	0.573
GCA_000421065_00945	GCA_000421065_04592	Unannotated protein.	Unannotated protein.	0.737
GCA_000421065_00945	GCA_000421065_04721	Unannotated protein.	Unannotated protein.	0.603
GCA_000421065_00947	GCA_000421065_00945	Unannotated protein.	Unannotated protein.	0.960