STRINGSTRING
cmEC cmEC cmeB cmeB cmeA cmeA LT85_0926 LT85_0926 cmeC-2 cmeC-2 macB macB LT85_1469 LT85_1469 cmeC-3 cmeC-3 LT85_2013 LT85_2013 cmeA-2 cmeA-2 LT85_2597 LT85_2597 macB-2 macB-2 macA macA LT85_3200 LT85_3200 LT85_3201 LT85_3201 LT85_3334 LT85_3334 macA-2 macA-2 lapE-2 lapE-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cmECRND efflux system; Outer membrane lipoprotein CmeC. (475 aa)
cmeBRND efflux system; Inner membrane transporter CmeB. (1050 aa)
cmeARND efflux system; Membrane fusion protein CmeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (407 aa)
LT85_0926Type I secretion outer membrane protein; TolC precursor. (434 aa)
cmeC-2RND efflux system; Outer membrane lipoprotein CmeC. (494 aa)
macBMacrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (669 aa)
LT85_1469Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (398 aa)
cmeC-3RND efflux system; Outer membrane lipoprotein CmeC. (478 aa)
LT85_2013RND multidrug efflux transporter; Acriflavin resistance protein. (1081 aa)
cmeA-2RND efflux system; Membrane fusion protein CmeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (403 aa)
LT85_2597RND efflux system; 'outer membrane lipoprotein, NodT family'. (507 aa)
macB-2Macrolide export ATP-binding/permease protein MacB; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family. (704 aa)
macAMacrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (500 aa)
LT85_3200Membrane fusion protein of RND family multidrug efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (396 aa)
LT85_3201RND multidrug efflux transporter; Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1038 aa)
LT85_3334RND efflux system; Outer membrane lipoprotein CmeC. (485 aa)
macA-2Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (423 aa)
lapE-2Type I secretion system; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (456 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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